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Report for CCDS16823.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16823.1 Public Mus musculus 2 Smim26 23 108 98 CCDS HistoryNCBI Gene:228715Re-query CCDS DB by CCDS ID:16823.1Re-query CCDS DB by GeneID:228715See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16823.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000136628.1 ENSMUSP00000132193.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000136628.1Link to Ensembl Protein Viewer:ENSMUSP00000132193.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000136628Re-query CCDS DB by Protein ID:ENSMUSP00000132193
Original member Current member NCBI NM_001033297.3 NP_001028469.1 Accepted alive Link to Nucleotide Sequence:NM_001033297.3Link to Protein Sequence:NP_001028469.1Re-query CCDS DB by Nucleotide ID:NM_001033297Re-query CCDS DB by Protein ID:NP_001028469Link to BLAST:NP_001028469.1

Chromosomal Locations for CCDS 16823.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 144594091 144594205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144595048 144595256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (324 nt):
ATGCGAGCTGAAAAGGCCTCTCTCTGGTACCGGCGAATGTCCCTTGTCTACGCACTTGGCGCCTGGTCCC
TGCTGGGCTCGGCGTTTTTCCTTTCACGGAAACAGAAAGTATCAGACTGTGAAGAAGGTCAAGAGGATGG
CTCAAGGAATGAAACACCTTTTTCTACAAGTGAAGACTCTGATTTAGAAACGGAAACGGTCGAGCTTGGT
GGAGGGTTTTATGTGAAATCATTTTTAAAGTATTCAGAAAATTCTGTCCCAGCCACTCAAAGGTTCCTGA
CCTATCTGAAGTCATGGACTGGTGGGCCTGGCCCGCAAGCGTGA

Translation (107 aa):
MRAEKASLWYRRMSLVYALGAWSLLGSAFFLSRKQKVSDCEEGQEDGSRNETPFSTSEDSDLETETVELG
GGFYVKSFLKYSENSVPATQRFLTYLKSWTGGPGPQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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