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Report for CCDS16899.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16899.1 Public Mus musculus 2 Bcl2l1 23 108 98 CCDS HistoryNCBI Gene:12048Re-query CCDS DB by CCDS ID:16899.1Re-query CCDS DB by GeneID:12048See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16899.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007803.11 ENSMUSP00000007803.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007803.11Link to Ensembl Protein Viewer:ENSMUSP00000007803.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000007803Re-query CCDS DB by Protein ID:ENSMUSP00000007803
Original member Current member EBI ENSMUST00000109820.4 ENSMUSP00000105445.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109820.4Link to Ensembl Protein Viewer:ENSMUSP00000105445.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109820Re-query CCDS DB by Protein ID:ENSMUSP00000105445
Original member NCBI NM_001289716.1 NP_001276645.1 Updated not alive Link to Nucleotide Sequence:NM_001289716.1Link to Protein Sequence:NP_001276645.1Re-query CCDS DB by Nucleotide ID:NM_001289716Re-query CCDS DB by Protein ID:NP_001276645
Current member NCBI NM_001289716.2 NP_001276645.1 Accepted alive Link to Nucleotide Sequence:NM_001289716.2Link to Protein Sequence:NP_001276645.1Re-query CCDS DB by Nucleotide ID:NM_001289716Re-query CCDS DB by Protein ID:NP_001276645Link to BLAST:NP_001276645.1
Original member NCBI NM_001289717.1 NP_001276646.1 Updated not alive Link to Nucleotide Sequence:NM_001289717.1Link to Protein Sequence:NP_001276646.1Re-query CCDS DB by Nucleotide ID:NM_001289717Re-query CCDS DB by Protein ID:NP_001276646
Current member NCBI NM_001289717.2 NP_001276646.1 Accepted alive Link to Nucleotide Sequence:NM_001289717.2Link to Protein Sequence:NP_001276646.1Re-query CCDS DB by Nucleotide ID:NM_001289717Re-query CCDS DB by Protein ID:NP_001276646Link to BLAST:NP_001276646.1
Original member NCBI NM_001355053.1 NP_001341982.1 Updated not alive Link to Nucleotide Sequence:NM_001355053.1Link to Protein Sequence:NP_001341982.1Re-query CCDS DB by Nucleotide ID:NM_001355053Re-query CCDS DB by Protein ID:NP_001341982
Current member NCBI NM_001355053.2 NP_001341982.1 Accepted alive Link to Nucleotide Sequence:NM_001355053.2Link to Protein Sequence:NP_001341982.1Re-query CCDS DB by Nucleotide ID:NM_001355053Re-query CCDS DB by Protein ID:NP_001341982Link to BLAST:NP_001341982.1
Original member NCBI NM_009743.5 NP_033873.3 Updated not alive Link to Nucleotide Sequence:NM_009743.5Link to Protein Sequence:NP_033873.3Re-query CCDS DB by Nucleotide ID:NM_009743Re-query CCDS DB by Protein ID:NP_033873
Current member NCBI NM_009743.6 NP_033873.3 Accepted alive Link to Nucleotide Sequence:NM_009743.6Link to Protein Sequence:NP_033873.3Re-query CCDS DB by Nucleotide ID:NM_009743Re-query CCDS DB by Protein ID:NP_033873Link to BLAST:NP_033873.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276645.1 233 Q64373-1 233 100% 0 0
NP_001276646.1 233 Q64373-1 233 100% 0 0
NP_001341982.1 233 Q64373-1 233 100% 0 0
NP_033873.3 233 Q64373-1 233 100% 0 0

Chromosomal Locations for CCDS 16899.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 152782145 152782282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152829427 152829990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGTCTCAGAGCAACCGGGAGCTGGTGGTCGACTTTCTCTCCTACAAGCTTTCCCAGAAAGGATACAGCT
GGAGTCAGTTTAGTGATGTCGAAGAGAATAGGACTGAGGCCCCAGAAGAAACTGAAGCAGAGAGGGAGAC
CCCCAGTGCCATCAATGGCAACCCATCCTGGCACCTGGCGGATAGCCCGGCCGTGAATGGAGCCACTGGC
CACAGCAGCAGTTTGGATGCGCGGGAGGTGATTCCCATGGCAGCAGTGAAGCAAGCGCTGAGAGAGGCAG
GCGATGAGTTTGAACTGCGGTACCGGAGAGCGTTCAGTGATCTAACATCCCAGCTTCACATAACCCCAGG
GACCGCGTATCAGAGCTTTGAGCAGGTAGTGAATGAACTCTTTCGGGATGGAGTAAACTGGGGTCGCATC
GTGGCCTTTTTCTCCTTTGGCGGGGCACTGTGCGTGGAAAGCGTAGACAAGGAGATGCAGGTATTGGTGA
GTCGGATTGCAAGTTGGATGGCCACCTATCTGAATGACCACCTAGAGCCTTGGATCCAGGAGAACGGCGG
CTGGGACACTTTTGTGGATCTCTACGGGAACAATGCAGCAGCCGAGAGCCGGAAAGGCCAGGAGCGCTTC
AACCGCTGGTTCCTGACGGGCATGACTGTGGCTGGTGTGGTTCTGCTGGGCTCACTCTTCAGTCGGAAGT
GA

Translation (233 aa):
MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEETEAERETPSAINGNPSWHLADSPAVNGATG
HSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRI
VAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPWIQENGGWDTFVDLYGNNAAAESRKGQERF
NRWFLTGMTVAGVVLLGSLFSRK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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