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Report for CCDS16908.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16908.1 Public Mus musculus 2 Plagl2 23 108 98 CCDS HistoryNCBI Gene:54711Re-query CCDS DB by CCDS ID:16908.1Re-query CCDS DB by GeneID:54711See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16908.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056924.13 ENSMUSP00000055709.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056924.13Link to Ensembl Protein Viewer:ENSMUSP00000055709.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000056924Re-query CCDS DB by Protein ID:ENSMUSP00000055709
Original member Current member EBI ENSMUST00000109795.1 ENSMUSP00000105419.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109795.1Link to Ensembl Protein Viewer:ENSMUSP00000105419.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109795Re-query CCDS DB by Protein ID:ENSMUSP00000105419
Original member Current member NCBI NM_018807.5 NP_061277.2 Accepted alive Link to Nucleotide Sequence:NM_018807.5Link to Protein Sequence:NP_061277.2Re-query CCDS DB by Nucleotide ID:NM_018807Re-query CCDS DB by Protein ID:NP_061277Link to BLAST:NP_061277.2

Chromosomal Locations for CCDS 16908.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 153231489 153232719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153235800 153236059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGACCACATTTTTCACCAGCGTCCCTCCCTGGATTCAAGATGCAAAGCAGGAGGAGGAAGTGGGCTGGA
AACTAGTTCCCAGGCCTCGGGGCCGGGAGGCAGAGAGTCAAGTGAAGTGCCAATGTGAAATCTCGGGGAC
ACCATTTTCAAATGGGGAGAAGCTAAGGCCTCACAGCCTTCCCCATCCGGAGCAGAGACCATATAGCTGT
CCTCAGCTGCACTGCGGCAAGGCTTTTGCCTCCAAGTACAAGCTGTATAGGCACATGGCCACCCACTCGG
CCCAGAAACCCCACCAGTGCATGTACTGTGACAAGATGTTTCACCGAAAGGACCATCTGCGGAACCACTT
GCAGACCCATGACCCCAACAAAGAGGCCCTCCACTGCTCTGAGTGTGGTAAGAATTATAATACAAAGCTG
GGATACCGTCGTCACCTGGCCATGCATGCTGCCAGCAGTGGTGATCTCAGCTGCAAGGTGTGCCTGCAGA
CCTTTGAGAGTACCCAGGCCCTATTGGAGCACCTGAAGGCTCACTCACGCCGGGTAGCAGGAGGTGCTAA
GGAGAAGAAGCACCCCTGTGACCATTGTGACAGGCGGTTCTATACTCGGAAGGATGTCCGACGGCACCTA
GTGGTGCACACAGGTCGTAAGGACTTCCTGTGTCAGTACTGTGCCCAGAGATTTGGCCGCAAGGATCACC
TGACACGCCATGTCAAGAAGAGCCACTCACAGGAACTGCTCAAGATCAAGACAGAGCCAGTGGATATGTT
AGGCTTGCTCAGCTGTAGCTCTACAGTCAGTGTAAAGGAAGAGCTGAGCCCTGTGCTTTGCATGGCCTCT
CGGGACGTGATGGGGGCTAAGGCCTTTCCTGGCATGTTGCCCATGGGTATGTATGGTGCCCACATCCCTA
CCATGCCCAGTGCGGGCATGCCACACTCCCTGGTGCACAACACACTGCCCATGGGTATGAGTTACCCTCT
GGAATCTTCTCCTATCTCCTCCTCAGCTCAGCTCCCTCCAAAATACCAGCTTGGATCTACCTCATACTTG
CCCGACAAACTGCCCAAAGTGGAGGTGGATAGTTTTCTGGCAGAGCTTCCTGGAAGCCTGTCTCTCTCCT
CGGCTGAACCTCAGCCCGCCTCACCTCAGCCGGCGGCAGCTGCAGCCCTCCTGGATGAAGCACTGCTCGC
CAAGAGTCCCGCCAACCTCTCCGAGGCCCTCTGCGCTGCTAATGTGGACTTTTCCCACTTACTGGGCTTT
CTTCCGCTCAACCTACCCCCATGTAACCCACCAGGGGCCACAGGAGGCTTGGTTATGGGCTACTCCCAAG
CTGAGGCACAGCCTTTGCTCACCACTTTGCAGGCTCAGCCTCAAGATTCCGCTGGAGCTGGGGGACCCCT
GAACTTTGGGCCTCTGCACTCCTTACCTCCTGTCTTCACCTCTGGCCTGAGTACCACCACCCTGCCTCGT
TTCCACCAAGCATTCCAGTAG

Translation (496 aa):
MTTFFTSVPPWIQDAKQEEEVGWKLVPRPRGREAESQVKCQCEISGTPFSNGEKLRPHSLPHPEQRPYSC
PQLHCGKAFASKYKLYRHMATHSAQKPHQCMYCDKMFHRKDHLRNHLQTHDPNKEALHCSECGKNYNTKL
GYRRHLAMHAASSGDLSCKVCLQTFESTQALLEHLKAHSRRVAGGAKEKKHPCDHCDRRFYTRKDVRRHL
VVHTGRKDFLCQYCAQRFGRKDHLTRHVKKSHSQELLKIKTEPVDMLGLLSCSSTVSVKEELSPVLCMAS
RDVMGAKAFPGMLPMGMYGAHIPTMPSAGMPHSLVHNTLPMGMSYPLESSPISSSAQLPPKYQLGSTSYL
PDKLPKVEVDSFLAELPGSLSLSSAEPQPASPQPAAAAALLDEALLAKSPANLSEALCAANVDFSHLLGF
LPLNLPPCNPPGATGGLVMGYSQAEAQPLLTTLQAQPQDSAGAGGPLNFGPLHSLPPVFTSGLSTTTLPR
FHQAFQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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