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Report for CCDS16974.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16974.1 Public Mus musculus 2 Rbl1 23 108 98 CCDS HistoryNCBI Gene:19650Re-query CCDS DB by CCDS ID:16974.1Re-query CCDS DB by GeneID:19650See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16974.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029170.7 ENSMUSP00000029170.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029170.7Link to Ensembl Protein Viewer:ENSMUSP00000029170.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029170Re-query CCDS DB by Protein ID:ENSMUSP00000029170
Original member Current member NCBI NM_011249.2 NP_035379.2 Accepted alive Link to Nucleotide Sequence:NM_011249.2Link to Protein Sequence:NP_035379.2Re-query CCDS DB by Nucleotide ID:NM_011249Re-query CCDS DB by Protein ID:NP_035379Link to BLAST:NP_035379.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035379.2 1063 Q64701-1 1063 100% 0 0

Chromosomal Locations for CCDS 16974.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 157147506 157147676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157150669 157150833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157152896 157153044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157159660 157159738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157161380 157161451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157163539 157163715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157167235 157167446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157169867 157170130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157174775 157174907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157175528 157175692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157177219 157177356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157187935 157188038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157188223 157188335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157191907 157192073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157193076 157193262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157194012 157194061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157195280 157195440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157195541 157195669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157195760 157195824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157196155 157196355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157199416 157199549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157204300 157204455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3192 nt):
ATGTTCGAGGACGAGCCCCACGCCGAGGGGGCGGCGGCGGTCGCCGCGGCCAGGGAGGCGCTGCAGGCCC
TG
TGCCAGGAACTGAACCTGGACGAGGGAAGCGCGGCCGAAGCCCTGGATGACTTCACGGCCATCCGCGG
C
AACTACAGCCTAGAGGGAGAAGTTATACACTGGCTGGCATGCTCTTTATATGTTGCTTGCCGCAAGAGC
ATC
ATTCCTACTGTGGGAAAGGGCGTCATGGAAGGAAACTGTGTCTCACTCACCAGAATACTGCGCTCAG
CT
AAGTTAAGCTTAATACAGTTTTTTAGTAAAATGAAGAAATGGATGGACATGTCAAACCTACCACAAGA
G
TTTCGTGAGCGGATAGAAAGGCTAGAAAGAAATTTTGAAGTATCTACTGTAATTTTTAAAAAATTTGAG
CCC
ATTTTTTTAGATATCTTTCAAAATCCATATGAAGAGCCACCAAAGTTGCCCCGGAGCCGAAAACAGA
G
G
AGGATCCCCTGCAGTGTTAAGGACCTCTTTAACTTCTGCTGGACACTCTTTGTTTACACCAAGGGGAA
T
TTCCGTATGATTGGTGATGATTTAGTAAACTCCTATCATTTACTTCTGTGCTGCTTGGACCTGATCTTT
GCC
AATGCTATAATGTGCCCAAATAGACGAGACTTGTTAAATCCATCATTTAAAGGCTTACCATCTGATT
TC
CATGCTCCGGACTTCAAAGCCGCAGAAGAGCCTCCGTGCATCATTGCTGTACTTTGTGATCTGCATGA
C
GGACTTCTAGTAGAAGCAAAAGGGATAAAGGAGCATTACTTTAAGCCATATATTTCAAAGCTCTTTGAT
AAG
AAGATTTTAAAAGGTGAATGCCTCTTGGATCTTTCCAGCTTTACTGATAATAGCAAAGCCGTGAACA
AG
GAATATGAAGAGTATGTCCTAACTGTTGGGGACTTCGATGAGAGGATCTTTTTGGGAGCAGATGCAGA
G
GAGGAGATTGGAACACCTCGAAAGTTCACTGCTGACACCCCATTTGGGAAACTGACATCACAGGCCAGT
GTG
GAATGCAACCTTCAACAACACTTTGAAAAAAAACGGTCATTTGCACCTTCTACCCCACTTACTGGAC
GG
CGGTATTTACAAGAAAAAGAGGCAGTCACCACGCCTGTAGCTTCAGCCACTCAAAGTGTAAGCCGGTT
A
CAGAGCATCGTCGCTGGATTAAAAAGCGCACCAAGTGAGCAGCTTCTGAATATTTTTGAATCTTGTATG
CGG
AATCCTATGGGAAACATTATAAAAATTGTGAAAGGAATAGGAGAGACTTTCTGCCAACACTATACCC
AG
TCCACAGATAAACAGCCAGGATCTCACATAGACTTTGCTGTAAACAGACTAAAACTGGCAGAAATTTT
G
TATTACAAAATACTGGAGACTATAATGGTCCAGGAAACACGACGGCTTCATGGAATGGACATGTCGGTT
CTT
TTAGAGCAAGATATATTTCATAAATCCTTGATGGCTTGTTGTTTGGAAATTGTGCTCTTTGCATATA
GC
TCACCCCGTACTTTCCCGTGGATTATTGAAGTTCTCGATTTGCAGCCATTTTATTTTTATAAGGTTAT
T
GAGGTGGTGATCCGCTCAGAGGAGGGCCTTTCCAGAGACATGGTGAAACATCTGAACAGCATTGAAGAA
CAG
ATTTTGGAGAGTTTGGCTTGGACTAATAATTCTGCACTGTGGGAGGCTCTGCATGCTTCTGCAAACA
GA
GTCCCTTCCTGTGAAGAAGTTATATTCCCTAATAACTTTGAAATAGGTAATGGAGGAAATGTGCAAGG
C
CATCTCCCCATGATGCCAATGTCTCCAATAATACATCCAAGAGTCAAGGAAGTTCGCACTGACAGTGGG
AGC
CTTCGACAGGATATGCAACCATTGTCTCCGATTTCTGTCCATGAGCGCTACAGCTCCCCTGCTGCAG
GA
AGTGCTAAGAGGAGACTGTTTGGAGATGACCCACCAAAGGACACACTGATGGATAAGATTATGGCAGA
A
GGAACAAAGCTGAAAATTGCTCCTTCGAGTGTCACTGCTGAAAGCTTATCAATTTCCCCTGGGCAAGCT
CTT
CTGACAATGGCCACAACCACAGTCACAGGGACGACGGGACGGAAAGTTACAGTCCCTTTGCATGGTA
TC
GCCAATGATGCTGGAGAAATCACACTGGTTCCTATCTCCATGAATCCAACTCAGGAGTCCACAGCTGA
G
AGCCCTGTGTCACTGACTGCCCAGTCACTAATTGGTACTTCTCCGAAACAGACCCATCTGACTAAAGCA
CAA
GATGCTCATCTGACCGGAGTAAGCAAACCCAAGAGGACTGGGTCCTTAGCACTGTTCTATAGGAAGG
TC
TATCATTTGGCAAGTGTGCGCCTACGTGACTTATGTCTAAAACTTGATGTTTCAAATGAATTACGAAG
G
AAGATCTGGACATGTTTTGAATTCACTTTAGTTCACTGCCCTGATTTAATGAAAGATAGGCATTTGGAT
CAG
CTCCTTCTGTGTGCATTTTACATCATGGCAAAAGTAACAAAAGAAGAAAGAACTTTTCAAGAAATAA
TG
AAAAGTTATAGGAATCAGCCCCAAGCTAATAGTCACGTATACAGGAGTGTTCTCTTGAAGAGTATTCC
A
GGAGGAGTCGTGGTGTACAATGGTGACTGTGAAATGACCGATGGTGACATAGAAGATGCCACAAAGACT
CCC
AACTGTTCCAGTGAACCAGTGAAAGAGGAAAGAGGTGATCTTATCAAATTTTACAATACAGTATATG
TA
GGAAGAGTGAAGTCATTTGCATTGAAGTATGATTTATCCAATCAGGACCATATAATGGATGCTCCCCC
G
CTCTCTCCTTTCCCACACATTAAGCAGCAGCCGGGTTCCCCACGCCGCATCTCCCAGCAGCATTCCCTC
TAT
GTGTCTCCACACAAGAACGGAGCGGGCCTCACCCCCAGGAGCGCACTGCTGTACAAGTTCAACGGCA
GC
CCTTCTAAGAGTTTGAAAGATATCAACAACATGATAAGGCAAGGCGAGCAGAAAACCAAGAAGCGCGT
G
ATAGCCATCAGTGGAGATGCAGACTCACCTGCCAAACGTCTCTGCCAAGAGAACGATGATGTTTTACTT
AAG
CGACTACAAGATGTTGTCAGTGAGAGAGCAAATCATTAA


Translation (1063 aa):
MFEDEPHAEGAAAVAAAREALQALCQELNLDEGSAAEALDDFTAIRGNYSLEGEVIHWLACSLYVACRKS
I
IPTVGKGVMEGNCVSLTRILRSAKL
SLIQFFSKMKKWMDMSNLPQEFRERIERLERNFEVSTVIFKKFE
P
IFLDIFQNPYEEPPKLPRSRKQ
RRIPCSVKDLFNFCWTLFVYTKGNFRMIGDDLVNSYHLLLCCLDLIF
A
NAIMCPNRRDLLNPSFK
GLPSDFHAPDFKAAEEPPCIIAVLCDLHDGLLVEAKGIKEHYFKPYISKLFD
K
K
ILKGECLLDLSSFTDNSKAVNKEYEEYVLTVGDFDERIFLGADAEEEIGTPRKFTADTPFGKLTSQAS
V
ECNLQQHFEK
KRSFAPSTPLTGRRYLQEKEAVTTPVASATQSVSRLQSIVAGLKSAPSEQLLNIFESCM
R
NPMGNIIKIVKGIGETFCQHYTQSTDKQPGSHI
DFAVNRLKLAEILYYKILETIMVQETRRLHGMDMSV
L
LEQDIFHKSLMACCLEIVLFAYSSPRTFPWIIEVLDLQPFYFYK
VIEVVIRSEEGLSRDMVKHLNSIEE
Q
ILESLAWTNNSALWEALHASANRVPSCEE
VIFPNNFEIGNGGNVQGHLPMMPMSPIIHPRVKEVRTDSG
S
LRQ
DMQPLSPISVHERYSSPAAGSAKRRLFGDDPPKDTLMDKIMAEGTKLKIAPSSVTAESLSISPGQA
L
LTMATTTVTGTTGRKVTVPLH
GIANDAGEITLVPISMNPTQESTAESPVSLTAQSLIGTSPKQTHLTKA
Q
DAHLTGVSKPKRTGSLALFYRK
VYHLASVRLRDLCLKLDVSNELRRKIWTCFEFTLVHCPDLMKDRHLD
Q
LLLCAFYIMAK
VTKEERTFQEIMKSYRNQPQANSHVYRSVLLKSIPGGVVVYNGDCEMTDGDIEDATKT
P
NCSSEPVKEERGDLIKFYNTVYVGRVKSFALKYDLSNQDHI
MDAPPLSPFPHIKQQPGSPRRISQQHSL
Y
VSPHKNGAGLTPRSALLYKFNGSPSK
SLKDINNMIRQGEQKTKKRVIAISGDADSPAKRLCQENDDVLL
K
RLQDVVSERANH




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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