NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, June 4, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17100.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17100.1 Public Mus musculus 2 Spata2 23 108 98 CCDS HistoryNCBI Gene:263876Re-query CCDS DB by CCDS ID:17100.1Re-query CCDS DB by GeneID:263876See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17100.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057627.15 ENSMUSP00000057095.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057627.15Link to Ensembl Protein Viewer:ENSMUSP00000057095.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000057627Re-query CCDS DB by Protein ID:ENSMUSP00000057095
Original member NCBI NM_170756.2 NP_739562.1 Updated not alive Link to Nucleotide Sequence:NM_170756.2Link to Protein Sequence:NP_739562.1Re-query CCDS DB by Nucleotide ID:NM_170756Re-query CCDS DB by Protein ID:NP_739562
Current member NCBI NM_170756.3 NP_739562.1 Accepted alive Link to Nucleotide Sequence:NM_170756.3Link to Protein Sequence:NP_739562.1Re-query CCDS DB by Nucleotide ID:NM_170756Re-query CCDS DB by Protein ID:NP_739562Link to BLAST:NP_739562.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_739562.1 515 Q8K004-1 515 100% 0 0

Chromosomal Locations for CCDS 17100.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 167483350 167484579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167485158 167485475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1548 nt):
ATGGATACGAAGTACAAGGATGACTTATTCCGGAAGTACGTGCAGTTCCATGAGGGCAAAGTGGACACCA
CCCCCGGCAACCAGCAGCCTGGCAGCGATGAGTACCTGCGCGTGGCAGCTGCCACCCTGCTCAGCCTGCA
CAAGGTGGACCCTTTATATCGATTTCGGCTGATCCAGTTTTATGAGGTGGTGGAGAGCTCCCTCCGCTCG
CTGAGCAGCTCCAGCCTGAGTGCTCTGCACTGCGCCTTCAGCATGCTGGAGACAATGGCCATCAACCTCT
TCCTGTTCCCCTGGAAGAAGGAGTTCCGCAGCATCAAGACCTACACTGGCCCTTTTGTTTACTATGTCAA
GTCCACGTTGCTGGAGAAGGACATCCGAGCCATTCTAAGGTTCATGGGCTACGAGCCTGAGTTGGGGACT
GTGTACAAACTCAAAGAGCTTGTGGAGTCCCTCCAGGTGAAGATGGTCTCCTTTGAGCTCTTCCTGGCCA
AGGTCGAGTGTGAGCAGATGCTGGGCATCCACTCGCAGGTGAAGGACAAGGGCTACTCAGAGCTGGACGT
GGTGGCTGAGCGCAAGGGCAGCACGGAGGATGCGCGCGGGTGCTCAGATGCTCTGCGGAGGCGGGCTGAG
AGTCGGGAGCACCTGACCACTTCCATGGCTCGTGTGGCACTCCAGAAATCAGCCAGTGAGCGAGCAGCCA
AGGACTACTACAAGCCCCGGGTGACCAAACCCTCCAGGTCTGTGGATGCCTACGACAGCTACTGGGAGAG
CAGGAAGCCCCCTTCAAAGGCCTCACTGAGTCTGCGCAAGGAGCCCCTGGCCATGGATGTAGGGGAAGAC
TTGAAGGACGAGATCATCCGCCCATCCCCCTCATTGCTGGCCATGTCCAGCTCCCCCCATGGTAGCCCTG
ATGACCTTTCCTCCATCTCCTCCATCAATGGCCTTGGCCTTCTTCGTAGTACATACTTTTCCACTCAGGA
TGACGTGGACCTGTATACGGATTCAGAACCCAGGGCCACCTACCGGAGGCAGGATGCTCTGCGGCCCGAT
GTGTGGCTGGTCAAAAATGATACCCACCCCATCTACCACAAGCGTTCACCCCCCACCAAAGAGTCTGCCC
TCTCCAAGTGCCAAAACTGCGGCCTGTCCTGCAGCTCCTCCCTCTGCCAGCGCTGTGACAGTGTGCTGGT
CTGTCCTTCGGCCTCCAAGCCCAGCGCTTTCCCCAGCAAGGCTTCTGTACACGACAGCTTGGCCCACGGG
GCACCTATGCGGGAGAAGTATGTGGGCCACCAGACTCAGGGCCTTGACCGGCTGGCACCTGTCCACTCAA
AGCCCAAGCCCTCTACCACAGCCACCTCCCGCTGTGGCTTCTGTAACCGTGCAGGTGCCACCAACACGTG
CACCCAGTGTTCAAAAGTTTCCTGTGACGCCTGCCTCGGCGCCTACCACTACGACCCGTGCTGCAGAAAG
AGTGAGCTGCACAAGTTCCTGCCCAACAGTCAGCTGAACTACAAGTCCGCCCCGTTCTCCCAGCTCGTGT
ACAGATAG

Translation (515 aa):
MDTKYKDDLFRKYVQFHEGKVDTTPGNQQPGSDEYLRVAAATLLSLHKVDPLYRFRLIQFYEVVESSLRS
LSSSSLSALHCAFSMLETMAINLFLFPWKKEFRSIKTYTGPFVYYVKSTLLEKDIRAILRFMGYEPELGT
VYKLKELVESLQVKMVSFELFLAKVECEQMLGIHSQVKDKGYSELDVVAERKGSTEDARGCSDALRRRAE
SREHLTTSMARVALQKSASERAAKDYYKPRVTKPSRSVDAYDSYWESRKPPSKASLSLRKEPLAMDVGED
LKDEIIRPSPSLLAMSSSPHGSPDDLSSISSINGLGLLRSTYFSTQDDVDLYTDSEPRATYRRQDALRPD
VWLVKNDTHPIYHKRSPPTKESALSKCQNCGLSCSSSLCQRCDSVLVCPSASKPSAFPSKASVHDSLAHG
APMREKYVGHQTQGLDRLAPVHSKPKPSTTATSRCGFCNRAGATNTCTQCSKVSCDACLGAYHYDPCCRK
SELHKFLPNSQLNYKSAPFSQLVYR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH