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Report for CCDS17114.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17114.1 Public Mus musculus 2 Nfatc2 23 108 98 CCDS HistoryNCBI Gene:18019Re-query CCDS DB by CCDS ID:17114.1Re-query CCDS DB by GeneID:18019See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17114.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171689.7 ENSMUSP00000130875.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171689.7Link to Ensembl Protein Viewer:ENSMUSP00000130875.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171689Re-query CCDS DB by Protein ID:ENSMUSP00000130875
Original member Current member NCBI NM_001037178.2 NP_001032255.1 Accepted alive Link to Nucleotide Sequence:NM_001037178.2Link to Protein Sequence:NP_001032255.1Re-query CCDS DB by Nucleotide ID:NM_001037178Re-query CCDS DB by Protein ID:NP_001032255Link to BLAST:NP_001032255.1
Original member Current member NCBI NM_001291179.1 NP_001278108.1 Accepted alive Link to Nucleotide Sequence:NM_001291179.1Link to Protein Sequence:NP_001278108.1Re-query CCDS DB by Nucleotide ID:NM_001291179Re-query CCDS DB by Protein ID:NP_001278108Link to BLAST:NP_001278108.1

Chromosomal Locations for CCDS 17114.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 168519386 168519552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168523238 168523378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168534918 168535090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168536203 168536405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168567139 168567310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168570598 168571100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGTCACCTCGAACCAGCCTCGCCGAGGACAGCTGCCTGGGCCGACACTCGCCCGTGCCCCGTCCGGCAT
CCCGCTCCTCCTCACCCGGTGCCAAGCGGAGGCATTCGTGCGCAGAGGCTTTGGTTGCTCCTCTGCCCGC
AGCCTCACCCCAGCGCTCCCGGAGCCCCTCGCCACAGCCCTCGCCTCACGTGGCACTGCAGGACGACAGC
ATCCCCGCTGGGTACCCCCCCACGGCCGGCTCTGCTGTTCTCATGGATGCCCTCAACACCCTGGCCACCG
ACTCGCCCTGCGGGATCCCCTCCAAGATATGGAAGACCAGTCCTGACCCGACGCCTGTGTCCACCGCTCC
GTCCAAGGCTGGCCTGGCCCGCCACATCTACCCTACTGTGGAGTTCCTGGGGCCATGTGAGCAGGAGGAG
AGGAGGAATTCCGCTCCAGAGTCCATCCTGCTGGTACCACCTACTTGGCCCAAGCAGTTGGTGCCGGCCA
TTCCCATCTGCAGCATCCCTGTGACTGCATCCCTCCCACCACTCGAGTGGCCACTCTCCAATCAGTCGGG
CTCCTATGAGCTACGGATTGAGGTCCAACCCAAGCCCCATCACCGGGCCCACTATGAGACGGAGGGCAGC
CGTGGCGCTGTCAAAGCCCCAACAGGAGGACACCCTGTGGTGCAGCTCCACGGCTACATGGAGAACAAGC
CTCTGGGGCTTCAGATCTTCATTGGGACAGCAGATGAGAGGATCCTTAAGCCGCACGCCTTCTACCAAGT
ACACAGGATCACTGGGAAAACGGTCACCACCACGAGCTATGAGAAGATCGTAGGCAACACCAAGGTCCTG
GAGATCCCCCTGGAGCCAAAGAACAACATGAGAGCCACCATCGACTGTGCAGGCATCCTGAAGCTCCGAA
ACGCTGACATCGAGCTGCGGAAGGGCGAGACGGACATCGGCAGGAAGAACACGCGTGTGCGCCTGGTGTT
CCGCGTGCACGTCCCAGAGCCCAGTGGGCGCATCGTCTCCCTGCAGGCTGCGTCCAACCCCATCGAGTGC
TCTCAGCGCTCTGCCCACGAGCTGCCCATGGTGGAGAGACAAGACATGGACAGCTGCCTGGTCTACGGGG
GCCAGCAGATGATCCTCACGGGCCAGAACTTCACAGCGGAGTCCAAGGTTGTGTTCATGGAGAAGACTAC
AGGACCTGCAGGGACCTGTGAGACTCGGCCTTTGCCCATCTCTCTGATCTCAGCTGACCGTCTCTCCCCC
TGGCTTTCCCGGCTGCAGAGAAACCCTCCTGGCTCTGTCTTCAGATGCTCCGTGCTCCTTCCTGCCCCAG
GATCTTCGCTTGTGCTGCTGGCTCTGTAA

Translation (452 aa):
MSPRTSLAEDSCLGRHSPVPRPASRSSSPGAKRRHSCAEALVAPLPAASPQRSRSPSPQPSPHVALQDDS
IPAGYPPTAGSAVLMDALNTLATDSPCGIPSKIWKTSPDPTPVSTAPSKAGLARHIYPTVEFLGPCEQEE
RRNSAPESILLVPPTWPKQLVPAIPICSIPVTASLPPLEWPLSNQSGSYELRIEVQPKPHHRAHYETEGS
RGAVKAPTGGHPVVQLHGYMENKPLGLQIFIGTADERILKPHAFYQVHRITGKTVTTTSYEKIVGNTKVL
EIPLEPKNNMRATIDCAGILKLRNADIELRKGETDIGRKNTRVRLVFRVHVPEPSGRIVSLQAASNPIEC
SQRSAHELPMVERQDMDSCLVYGGQQMILTGQNFTAESKVVFMEKTTGPAGTCETRPLPISLISADRLSP
WLSRLQRNPPGSVFRCSVLLPAPGSSLVLLAL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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