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Report for CCDS17270.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17270.2 Public Mus musculus 3 Ect2 23 108 98 CCDS HistoryNCBI Gene:13605Re-query CCDS DB by CCDS ID:17270.2Re-query CCDS DB by GeneID:13605See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 17270.2
The coding region has been updated to an alternate splice pattern, which adds an in-frame coding exon, and extends the N-terminus to one that is more supported by available conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 17270.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108300.7 ENSMUSP00000103935.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108300.7Link to Ensembl Protein Viewer:ENSMUSP00000103935.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108300Re-query CCDS DB by Protein ID:ENSMUSP00000103935
Original member NCBI NM_007900.3 NP_031926.2 Updated not alive Link to Nucleotide Sequence:NM_007900.3Link to Protein Sequence:NP_031926.2Re-query CCDS DB by Nucleotide ID:NM_007900Re-query CCDS DB by Protein ID:NP_031926
Current member NCBI NM_007900.4 NP_031926.2 Accepted alive Link to Nucleotide Sequence:NM_007900.4Link to Protein Sequence:NP_031926.2Re-query CCDS DB by Nucleotide ID:NM_007900Re-query CCDS DB by Protein ID:NP_031926Link to BLAST:NP_031926.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031926.2 913 Q07139-1 913 100% 0 0

Chromosomal Locations for CCDS 17270.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 27098399 27098488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27100828 27100971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27102395 27102502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27115396 27115550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27117778 27117916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27121961 27122080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27122397 27122475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27123903 27123984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27126879 27126975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27127734 27127844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27130054 27130122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27131785 27131904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27137025 27137161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27138502 27138724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27138848 27138910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27139014 27139129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27139532 27139662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27141626 27141699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27144952 27145059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27145956 27146045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27146837 27147019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27148795 27148887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27148993 27149072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27150029 27150158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2742 nt):
ATGGCTGACGACAGCGTGTTACCATCTCCTTCTGAGATAACTAGCTTGGCAGACTCTTCAGTGTTTGATT
CTAAAGTTGCTGAAATGTCCAAGGAAAACTTGTGCTTGGCGTCTACTTCAAATGTTGATGAAGAAATGCC
GCAGGTTGAAGCAAGAGTGATAATGGTCCAGGATGCTGGGAAACAAGAAGAACTTCTAAAGGCCTTAAAG
ACTATTAAGATAATGGAAGTCCCTGTTATAAAGATAAAAGAAAGTTGTCCTGGAAAATCGGAGGAAAAAT
TAATAAAAAGTATTATTAATATGGAAATGAAAGTGCCCTGTGTAAAGATGGACTCAATGGAAGAATTTGA
AAGTTTGGATTCCCCAGAATTTGAGAATATATTTGTAGTTACTGACTTCCAGAATTCTGTCTTCAATGAC
TTATACAAGGCTGATTGTAGGATTGTTGGGCCACCAGTTATACTCAACTGTGCACAAAGGGGAGAGCCCT
TGCCGTTTTCCTGCCGGCCGCTGTATTGTACGAGTATGCTGAACCTGGTGCTCTGCTTCACTGGATTCAG
GAAGAAGGAGGAGCTTGTCAAATTGGTGACGTTGGTTCATCATATGGGTGGAGTTATTCGAAAAGAGTGT
AATTCCAAAGTAACACATCTGGTGGCAAATTGTACACAAGGCGAAAAATTTAGGGTTGCTGTGAGCCTGG
GCACTCCAATTATGAAGCCAGAATGGATTTATAAAGCGTGGGAAAGACGCAATGAACAGTGTTTCTGTGC
AGCAGTTGATGACTTTAGAAATGAATTTAAAGTTCCTCCATTCCAAGATTGCATTTTAAGTTTCCTGGGA
TTTTCAGATGAAGAGAAACATAGTATGGAAGAAATGACTGAAATGCAAGGAGGTAGCTATTTACCAGTTG
GGGATGAAAGGTGCACTCACCTTATTGTTGAAGAGAATACAGTAAAGGACCTTCCATTCGAACCTTCAAA
GAAACTTTTTGTTGTCAAGCAAGAGTGGTTCTGGGGAAGCATTCAGATGGACGCTCGTGCAGGAGAGACT
ATGTATTTGTATGAAAAGGCTAATACTCCTGAGCTCAAGAAATCGGTGTCTCTGCTTTCTCTAAGTACTC
CAAACAGCAACCGCAAGAGACGGAGATTGAAAGAGACCCTGGCTCAGCTCTCCAGGGAGACTGACCTCTC
TCCTTTCCCTCCCCGGAAGCGGCCCTCAGCTGAGCACTCTCTTTCTATTGGCTCACTCCTGGATATCTCC
AACACACCCGAGTCCAGCATCCACTATGGAGAAACACCGAAGTCCTGTGCTAAGTCTTCTAGAAGTTCTA
CTCCAGTTCCTCCAAAGCAGTCAGCCAGGTGGCAGGTGGCGAAAGAGCTCTACCAGACTGAGAGCAATTA
TGTCAATATACTGGCCACAATCATTCAATTATTTCAGGTGCCCTTAGAAGAAGAAGGACAGCGTGGTGGG
CCTATTCTTGCACCTGAGGAGATCAAGACTATTTTTGGGAGCATCCCAGATATCTTTGATGTGCATATGA
AGATCAAGGATGATCTTGAAGACCTTATTGCTAACTGGGATGAGAGCAGAAGTATTGGTGACATCTTTCT
TAAATATGCAAAAGATTTGGTAAAAACCTACCCTCCGTTTGTAAACTTCTTTGAAATGAGCAAGGAAATG
ATCATTAAATGTGAGAAACAAAAGCCCAGATTTCATGCTTTCCTCAAGATAAATCAAGCTAAACCAGAAT
GTGGACGACAGAGCCTTGTGGAACTTCTCATCCGGCCAGTGCAGAGGCTACCCAGTGTCGCTTTACTTTT
AAACGATCTTAAAAAGCATACAGCTGATGAAAATCCAGACAAAAGCACTTTAGAAAAAGCTATTGGATCA
CTAAAAGAAGTAATGACACATATCAATGAGGATAAGAGAAAAACAGAAGCACAGAAGCAAATTTTTGATG
TTGTTTATGAAGTAGATGGATGCCCAGCTAATCTCTTATCTTCTCATCGGAGCCTGGTGCAACGAGTGGA
AACGGTTTCCCTTGGTGAGCACCCTTGCGACCGAGGAGAACAAGTCACTCTCTTCCTCTTCAATGACTGC
CTCGAGATAGCAAGAAAGCGGCACAAGGTTATTGGCACTTTTAGAAGTCCTCACGACCGCACCCGGCCCC
CCGCTTCTCTGAAGCACATTCATCTCATGCCTCTTTCTCAGATTAAGAAGGTGCTGGACATCCGAGAGAC
AGAAGATTGTCACAATGCCTTTGCCTTGCTTGTAAGGCCACCAACAGAACAGGCCAATGTACTGCTCAGC
TTCCAGATGACGTCAGAGGAGCTTCCAAAGGAGAGCTGGCTGAAGATGCTGTGCCGACATGTAGCCAACA
CCATTTGTAAGGCAGATGCTGAGAATCTTATGTATGTGGCTGATCCAGAATCCTTTGAAGTAAATACAAA
AGATATGGATAGTACATTGAGTCGAGCATCTAGAGCAATAAAGAAGACTTCAAAAAAGGTTACAAGGGCA
TTCTCTTTTTCCAAAACTCCCAAGAGAGCCCTGCGGATGGCTCTTTCATCATCCCATAGCTCAGAGGGAA
GGAGTCCTCCGAGCAGTGGCAAGCTTGCTGTGAGCCGTCTGTCCAGCACATCATCCTTAGCAGGTATTCC
ATCTCCCTCCCTTGTCAGCCTCCCTTCTTTCTTTGAACGGAGAAGTCATACATTAAGTCGATCTACAACT
CACTTGATATGA

Translation (913 aa):
MADDSVLPSPSEITSLADSSVFDSKVAEMSKENLCLASTSNVDEEMPQVEARVIMVQDAGKQEELLKALK
TIKIMEVPVIKIKESCPGKSEEKLIKSIINMEMKVPCVKMDSMEEFESLDSPEFENIFVVTDFQNSVFND
LYKADCRIVGPPVILNCAQRGEPLPFSCRPLYCTSMLNLVLCFTGFRKKEELVKLVTLVHHMGGVIRKEC
NSKVTHLVANCTQGEKFRVAVSLGTPIMKPEWIYKAWERRNEQCFCAAVDDFRNEFKVPPFQDCILSFLG
FSDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVKDLPFEPSKKLFVVKQEWFWGSIQMDARAGET
MYLYEKANTPELKKSVSLLSLSTPNSNRKRRRLKETLAQLSRETDLSPFPPRKRPSAEHSLSIGSLLDIS
NTPESSIHYGETPKSCAKSSRSSTPVPPKQSARWQVAKELYQTESNYVNILATIIQLFQVPLEEEGQRGG
PILAPEEIKTIFGSIPDIFDVHMKIKDDLEDLIANWDESRSIGDIFLKYAKDLVKTYPPFVNFFEMSKEM
IIKCEKQKPRFHAFLKINQAKPECGRQSLVELLIRPVQRLPSVALLLNDLKKHTADENPDKSTLEKAIGS
LKEVMTHINEDKRKTEAQKQIFDVVYEVDGCPANLLSSHRSLVQRVETVSLGEHPCDRGEQVTLFLFNDC
LEIARKRHKVIGTFRSPHDRTRPPASLKHIHLMPLSQIKKVLDIRETEDCHNAFALLVRPPTEQANVLLS
FQMTSEELPKESWLKMLCRHVANTICKADAENLMYVADPESFEVNTKDMDSTLSRASRAIKKTSKKVTRA
FSFSKTPKRALRMALSSSHSSEGRSPPSSGKLAVSRLSSTSSLAGIPSPSLVSLPSFFERRSHTLSRSTT
HLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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