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Report for CCDS17306.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17306.1 Public Mus musculus 3 Dcun1d1 23 108 98 CCDS HistoryNCBI Gene:114893Re-query CCDS DB by CCDS ID:17306.1Re-query CCDS DB by GeneID:114893See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17306.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000178098.7 ENSMUSP00000137324.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178098.7Link to Ensembl Protein Viewer:ENSMUSP00000137324.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178098Re-query CCDS DB by Protein ID:ENSMUSP00000137324
Original member Current member EBI ENSMUST00000198389.4 ENSMUSP00000143243.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198389.4Link to Ensembl Protein Viewer:ENSMUSP00000143243.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000198389Re-query CCDS DB by Protein ID:ENSMUSP00000143243
Original member Current member NCBI NM_001205362.1 NP_001192291.1 Accepted alive Link to Nucleotide Sequence:NM_001205362.1Link to Protein Sequence:NP_001192291.1Re-query CCDS DB by Nucleotide ID:NM_001205362Re-query CCDS DB by Protein ID:NP_001192291Link to BLAST:NP_001192291.1
Original member Current member NCBI NM_033623.6 NP_296372.3 Accepted alive Link to Nucleotide Sequence:NM_033623.6Link to Protein Sequence:NP_296372.3Re-query CCDS DB by Nucleotide ID:NM_033623Re-query CCDS DB by Protein ID:NP_296372Link to BLAST:NP_296372.3

Chromosomal Locations for CCDS 17306.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 35895620 35895699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35897464 35897560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35897793 35897875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35916220 35916350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35919001 35919169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35920971 35921145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGATCTTCACACAATCTAGTGAGAAAACTGCAGTAAGTTGTCTTTCTCAAAATGACTGGAAGTTAGATG
TTGCAACAGATAATTTTTTTCAAAATCCAGAACTTTATATACGGGAGAGTGTAAAAGGATCGTTGGACAG
GAAGAAGTTAGAGCAACTGTACACTAGATACAAAGACCCTCAGGATGAAAATAAAATTGGAATAGATGGT
ATACAGCAGTTCTGTGATGATCTGGCCCTCGATCCAGCCAGCATCAGTGTGTTGATCATTGCATGGAAGT
TCAGGGCGGCCACACAGTGCGAGTTCTCCAAACAGGAGTTCATGGATGGCATGACAGAGTTAGGATGTGA
CAGCATAGAAAAACTAAAGGCCCAAATACCCAAGATGGAACAAGAATTGAAAGAACCAGGACGATTTAAG
GATTTTTACCAGTTTACTTTTAATTTTGCAAAGAATCCAGGACAAAAAGGATTAGATCTAGAAATGGCCA
TTGCTTACTGGAACTTAGTGCTTAATGGAAGATTTAAATTCTTAGACTTATGGAATAAATTTTTGTTGGA
GCATCATAAACGATCAATACCAAAAGACACGTGGAATCTTCTGTTAGACTTCAGTTCAATGATTGCAGAT
GACATGTCCAATTATGATGAAGAAGGAGCATGGCCTGTCCTTATTGATGACTTTGTGGAATTTGCACGCC
CTCAAATTGCTGGGACAAAAAGTACAACAGTGTAG

Translation (244 aa):
MIFTQSSEKTAVSCLSQNDWKLDVATDNFFQNPELYIRESVKGSLDRKKLEQLYTRYKDPQDENKIGIDG
IQQFCDDLALDPASISVLIIAWKFRAATQCEFSKQEFMDGMTELGCDSIEKLKAQIPKMEQELKEPGRFK
DFYQFTFNFAKNPGQKGLDLEMAIAYWNLVLNGRFKFLDLWNKFLLEHHKRSIPKDTWNLLLDFSSMIAD
DMSNYDEEGAWPVLIDDFVEFARPQIAGTKSTTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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