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Report for CCDS17312.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17312.1 Public Mus musculus 3 Exosc9 23 108 98 CCDS HistoryNCBI Gene:50911Re-query CCDS DB by CCDS ID:17312.1Re-query CCDS DB by GeneID:50911See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17312.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029269.11 ENSMUSP00000029269.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029269.11Link to Ensembl Protein Viewer:ENSMUSP00000029269.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029269Re-query CCDS DB by Protein ID:ENSMUSP00000029269
Original member Current member NCBI NM_019393.2 NP_062266.1 Accepted alive Link to Nucleotide Sequence:NM_019393.2Link to Protein Sequence:NP_062266.1Re-query CCDS DB by Nucleotide ID:NM_019393Re-query CCDS DB by Protein ID:NP_062266Link to BLAST:NP_062266.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062266.1 438 Q9JHI7 438 100% 0 0

Chromosomal Locations for CCDS 17312.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 36552686 36552751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36553035 36553129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36553806 36553925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36554040 36554142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36554638 36554775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36555482 36555564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36556863 36556995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36561103 36561191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36562018 36562164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36563073 36563257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36565218 36565296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36565429 36565507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGAAGGAGACGCCGCTTTCCAACTGTGAGCGCCGCTTCCTGCTCCGCGCAATTGAGGAGAAGAAGCGCC
TGGACGGCAGACAGACCTATGATTACAGGAACATCAGGATCTCATTCGGAACGGATTATGGATGCTGTAT
TGTGGAACTGGGAAAAACAAGAGTCCTTGGACAGGTTTCCTGTGAACTTGTTTCTCCGAAACTCAATAGG
GCAACGGAAGGTATCCTCTTTTTTAACCTTGAGCTTTCTCAGATGGCTGCTCCAGCTTTTGAGCCTGGCA
GGCAGTCAGATCTCTTGGTGAAGCTGAATCGACTCTTAGAAAGGTGTCTACGAAATTCAAAGTGTATAGA
CACTGAATCTCTCTGTGTTGTCGCTGGTGAAAAGGTTTGGCAGATCCGTGTAGACCTACATTTATTAAAT
CATGATGGGAATATTATTGATGCTGCTAGCATTGCTGCAATTGTAGCCTTGTGTCACTTCCGAAGACCTG
ATGTCTCTGTCCAAGGAGAGGAAGTAACACTGTATACCCCTGAAGAGCGTGATCCCGTGCCATTGAGCAT
CCACCATATGCCCATTTGTGTCAGTTTTGCTTTCTTTCAGCAAGGAACATACTTATTGGTGGACCCCAAT
GAACGTGAAGAACGAGTAATGGATGGCTTGCTGGTGATTGCCATGAATAAGCATCGAGAAATTTGTACTA
TTCAGTCTAGTGGTGGGATAATGCTGCTTAAAGACCAGGTTTTCAGATGCAGTAAAATAGCTGGTGTGAA
AGTAGCAGAAATCACAGAGCTAATACAGAAAGCTTTGGAAAATGACCAGAGAGTCAGGAAAGAAGGTGGA
AAATTTGGCTTTGCAGAGTCTATAGCAAACCAAAGAATCACAGCGTTTAAAATGGAGACGGCCCCTATTG
ATACCTCCAACATAGAGGAGAGAGCAGAAGAAATTATTGCTGAAGCTGAACCTCCCCCAGAAGTTGTTTC
TCAACCTGTGCTGTGGACTCCTGGAACTGCCCAGATTGGAGACGGAATAGAAAACTCCTGGGGTGACCTT
GAAGATTCTGAGAAGGAAGAGGAAGAGGAGGAAGGTGGCATTGATGAAGCTGTCATTCTTGATGATACAA
AGATGGACACTGGAGAAGTTTCTGATATTGGGAGTCAAGGTGCCCCTATAGTGCTATCAGATAGTGAAGA
AGAAGAAATGATTATTTTGGAGCCAGAGAAGAACCCAAAGAAAATAAGAGCTCAGACCAGTGCAAACCAG
AAGGCACCAAGTAAAGGCCAAGGGAAAAGGAAGAAGAAGAAGAGAACTGCTAACTAA

Translation (438 aa):
MKETPLSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNR
ATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLN
HDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPN
EREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVFRCSKIAGVKVAEITELIQKALENDQRVRKEGG
KFGFAESIANQRITAFKMETAPIDTSNIEERAEEIIAEAEPPPEVVSQPVLWTPGTAQIGDGIENSWGDL
EDSEKEEEEEEGGIDEAVILDDTKMDTGEVSDIGSQGAPIVLSDSEEEEMIILEPEKNPKKIRAQTSANQ
KAPSKGQGKRKKKKRTAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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