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Report for CCDS17337.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17337.1 Public Mus musculus 3 Elf2 23 108 98 CCDS HistoryNCBI Gene:69257Re-query CCDS DB by CCDS ID:17337.1Re-query CCDS DB by GeneID:69257See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17337.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163748.7 ENSMUSP00000126871.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163748.7Link to Ensembl Protein Viewer:ENSMUSP00000126871.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163748Re-query CCDS DB by Protein ID:ENSMUSP00000126871
Original member Current member EBI ENSMUST00000194641.5 ENSMUSP00000141197.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000194641.5Link to Ensembl Protein Viewer:ENSMUSP00000141197.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000194641Re-query CCDS DB by Protein ID:ENSMUSP00000141197
Original member Current member NCBI NM_023502.2 NP_075991.1 Accepted alive Link to Nucleotide Sequence:NM_023502.2Link to Protein Sequence:NP_075991.1Re-query CCDS DB by Nucleotide ID:NM_023502Re-query CCDS DB by Protein ID:NP_075991Link to BLAST:NP_075991.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075991.1 593 Q9JHC9-1 593 100% 0 0

Chromosomal Locations for CCDS 17337.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 51256361 51256985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51257425 51257775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51259172 51259364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51260999 51261085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51264869 51265042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51266753 51266866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51308050 51308215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51323222 51323293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGGCATCGGCGGTGGTTGACAGCGGAGGCTCTGCTCTGGAGCTTCCTAGCGATGGAGGAGAAAATCAAG
AGGGAGGTGACACGGGCCCTGACTGCCCGGCAGTGATTGTGGAGCCAGTTCCCAGTGCGAGGTTAGAGCA
GGGCTATGCTGCCCAGGTGCTGGTCTATGACGACGAGACTTATATGATGCAGGATGTGGCGGAAGAACAG
GAAGTTGAGACGGAGAATTCAGAAACAGTGGAAGCATCAGTTCACAGCAGTAATGCTCACTGTACGGATA
AGACCATTGAAGCTGCTGAAGCCCTGCTTCATATGGAATCTCCTACCTGCTTGAGGGATTCAAGAAGTCC
TGTGGAAGTGTTTGTCCCTCCTTGTATATCAACTCCAGAGTTTATCCATGCTGCGATGAGGCCGGATGTC
ATCACAGAGACTGTAGTGGAGGTGTCCACAGAAGAGTCTGAGCCGATGGATGCCTCGCCTATCCCTACTT
CACCAGACAGCCACGAACCAATGAAAAAGAAAAAAGTTGGCCGTAAACCAAAGACCCAGCAGTCACCAGT
TTCCAATGGGTCTCCTGAGTTAGGAATCAAGAAGAAAGCCAGAGAAGGAAAAGGAAACACAACCTATCTG
TGGGAGTTTCTTTTAGATTTGCTTCAAGATAAAAATACTTGTCCCAGGTATATTAAATGGACTCAGAGAG
AAAAGGGCATATTCAAACTTGTGGACTCAAAGGCTGTCTCGAAGCTCTGGGGGAAGCATAAGAACAAACC
AGATATGAACTATGAAACCATGGGGCGAGCGTTAAGATATTACTACCAAAGGGGAATTCTTGCAAAGGTT
GAAGGACAGAGGCTTGTATATCAGTTCAAGGACATGCCCAAAAACATAGTGGTCATTGATGATGACAAAA
GTGAGACCTGCCCTGAAGACTTGGCAGCAGCTGCTGATGACAAGTCTTTAGAACGAGTGTCACTATCTGC
AGAAAGTCTCCTGAAGGCAGCAACTGCCGTCCGAGGTGGGAAAAACTCATCTCCTCTGAACTGCTCCAGA
GCAGAGAAGGGTGTGGCTAGAGTTGTGAACATCACCTCCCCTACTCACGACGGTTCCTCCAGGTCTCCTA
CTACCACTGCACCTGTGTCAGCAGCAGCAGCTCCAAGGACAGTTCGTGTGGCAATGCAAGTCCCTGTGGT
AATGACCTCACTGGGCCAAAAGATTTCAGCGGTGGCAGTTCAGTCAGTCAATGCAGGCACAGGCTCGCCG
TTAATAACCAGCACCAGTCCAGCCTCGGCCAGCTCTCCAAAAGTAGTCATCCAGACAGTCCCGACCGTGA
TGCCGGCCTCCACTGAAAATGGAGACAGAATCACCATGCAGCCTGCCAAGATTATCACCATCCCCGCCAC
CCAGCTCGCACAGTGTCAACTCCAGGCAAAGTCAAACCTGACGGGGTCAGGAAGCATTAACATTGTTGGA
ACCCCACTGGCTGTGAGGGCACTCACCCCTGTTTCAATAGCCCACGGTACACCTGTAATGAGACTGTCTG
TGCCTGCTCAGCAGGCTTCTGGCCAGACTCCTCCTCGAGTTATCAGTGCGCTCCTAAAAGGGCCGGAGGG
GAAATCAGAAGCCAAAAAGCAGGAACACGATGTGAAAACTTTGCAGCTGGTAGAAGAGAAGGGGGCAGAC
GGCAATAAGACAGTAACCCACGTAGTGGTCGTCAGTGCGCCGTCTGCTATCGCCCTTCCTGTGACTATGA
AAACCGAAGGGCTAGTGACGTGTGAGAAATAA

Translation (593 aa):
MASAVVDSGGSALELPSDGGENQEGGDTGPDCPAVIVEPVPSARLEQGYAAQVLVYDDETYMMQDVAEEQ
EVETENSETVEASVHSSNAHCTDKTIEAAEALLHMESPTCLRDSRSPVEVFVPPCISTPEFIHAAMRPDV
ITETVVEVSTEESEPMDASPIPTSPDSHEPMKKKKVGRKPKTQQSPVSNGSPELGIKKKAREGKGNTTYL
WEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRALRYYYQRGILAKV
EGQRLVYQFKDMPKNIVVIDDDKSETCPEDLAAAADDKSLERVSLSAESLLKAATAVRGGKNSSPLNCSR
AEKGVARVVNITSPTHDGSSRSPTTTAPVSAAAAPRTVRVAMQVPVVMTSLGQKISAVAVQSVNAGTGSP
LITSTSPASASSPKVVIQTVPTVMPASTENGDRITMQPAKIITIPATQLAQCQLQAKSNLTGSGSINIVG
TPLAVRALTPVSIAHGTPVMRLSVPAQQASGQTPPRVISALLKGPEGKSEAKKQEHDVKTLQLVEEKGAD
GNKTVTHVVVVSAPSAIALPVTMKTEGLVTCEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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