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Report for CCDS17345.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17345.1 Public Mus musculus 3 Nhlrc3 23 108 98 CCDS HistoryNCBI Gene:212114Re-query CCDS DB by CCDS ID:17345.1Re-query CCDS DB by GeneID:212114See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17345.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056749.13 ENSMUSP00000055295.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056749.13Link to Ensembl Protein Viewer:ENSMUSP00000055295.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000056749Re-query CCDS DB by Protein ID:ENSMUSP00000055295
Original member Current member NCBI NM_172501.2 NP_766089.1 Accepted alive Link to Nucleotide Sequence:NM_172501.2Link to Protein Sequence:NP_766089.1Re-query CCDS DB by Nucleotide ID:NM_172501Re-query CCDS DB by Protein ID:NP_766089Link to BLAST:NP_766089.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766089.1 347 Q8CCH2 347 100% 0 0

Chromosomal Locations for CCDS 17345.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 53452397 53452649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53453542 53453654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53456426 53456517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53458485 53458685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53461632 53461779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53462312 53462464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53463060 53463143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGGCGAGAGCCTGGGTCTGCCTGGCGGGCGCCGCCTTCTTCCTTTCCTGTCTGGTTTTGCATTCGCGCT
TCTGTGGCTCGCTGGTTTCAAGGACATTTTCTTTTCACGTTTCCTGGAGAATGGAGGACCCTCTTTTCCG
GCTGGATTTGGGTTGGCCCAAGAATTCGGAATACTTCACTGGTGCAACATTTTGTGTTGCAGTTGATTCC
CTCAACGGGTTAGTTTACGTAGCCCAAAGAGGGGATAACATCCCCAAGGTATTAGTGTTCTCAGAGGATG
GCTATTTCCTACGAGCCTGGAATTATACAGTTGACACACCCCATGGTATGTTTGTCTCCGGCACACCATT
TGAACAGTCCGTCTGGATCACGGACGTAGGAAGCGGACCCTACGGCCATACTGTTAAAAAATATAATTCC
CTGGGTGATCTTGTTCAAGTCTTGGGAACCCCAGGCAAGAAGGGCACTGGCTTGAACCCGCTGCAGTTTG
ACAACCCTGCAGAATTATATGTAGATGACACAGGGGAGATGTACATTGTGGATGGAGATGGGGGACTGAA
TAACAGACTGGTCAAACTATCCCAAGATTTCATGATCCTCTGGCTGCGTGGAGAGAATGGGACAGGACCT
GCCAAGTTCAACATACCTCACAGCGTTACACTTGACGCAGTTGGTCGGGTGTGGGTTGCGGACCGAGGAA
ATAAGAGGCTCCAAGTATTTGATAAGGACACTGGAGAGTGGTTAGGAGCATGGGACAACTGTTTCACAGA
GGAGGGGCCTTCTGCTGTGAGGTTCACCCCAGATGGGAAGTACTTGATTGTGGCCCAGCTGAACCTCAGT
AGGCTGTCAGTGTTGCTTGCCCCACCCTCCGGAAGCATCGGAGACTGCTCTGTGGTCAGCACTATCCAGC
TGGCAGATCAGGTTCTGCCACATCTTTTGGAAGTCGACAGAAAGACTGGCGCAGTGTATGTAGCAGAAAT
TGGGGCAAAACAAATACAAAAATACATCCCGTGGCACAGCCGCACCCCTGCCTTCGGCGCTTAG

Translation (347 aa):
MARAWVCLAGAAFFLSCLVLHSRFCGSLVSRTFSFHVSWRMEDPLFRLDLGWPKNSEYFTGATFCVAVDS
LNGLVYVAQRGDNIPKVLVFSEDGYFLRAWNYTVDTPHGMFVSGTPFEQSVWITDVGSGPYGHTVKKYNS
LGDLVQVLGTPGKKGTGLNPLQFDNPAELYVDDTGEMYIVDGDGGLNNRLVKLSQDFMILWLRGENGTGP
AKFNIPHSVTLDAVGRVWVADRGNKRLQVFDKDTGEWLGAWDNCFTEEGPSAVRFTPDGKYLIVAQLNLS
RLSVLLAPPSGSIGDCSVVSTIQLADQVLPHLLEVDRKTGAVYVAEIGAKQIQKYIPWHSRTPAFGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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