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Report for CCDS17394.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17394.1 Public Mus musculus 3 Rsrc1 23 108 98 CCDS HistoryNCBI Gene:66880Re-query CCDS DB by CCDS ID:17394.1Re-query CCDS DB by GeneID:66880See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17394.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065074.13 ENSMUSP00000066797.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065074.13Link to Ensembl Protein Viewer:ENSMUSP00000066797.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000065074Re-query CCDS DB by Protein ID:ENSMUSP00000066797
Original member Current member EBI ENSMUST00000161726.1 ENSMUSP00000124347.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161726.1Link to Ensembl Protein Viewer:ENSMUSP00000124347.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161726Re-query CCDS DB by Protein ID:ENSMUSP00000124347
Original member Current member EBI ENSMUST00000162036.7 ENSMUSP00000125468.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162036.7Link to Ensembl Protein Viewer:ENSMUSP00000125468.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162036Re-query CCDS DB by Protein ID:ENSMUSP00000125468
Original member NCBI NM_025822.4 NP_080098.1 Updated not alive Link to Nucleotide Sequence:NM_025822.4Link to Protein Sequence:NP_080098.1Re-query CCDS DB by Nucleotide ID:NM_025822Re-query CCDS DB by Protein ID:NP_080098
Current member NCBI NM_025822.5 NP_080098.1 Accepted alive Link to Nucleotide Sequence:NM_025822.5Link to Protein Sequence:NP_080098.1Re-query CCDS DB by Nucleotide ID:NM_025822Re-query CCDS DB by Protein ID:NP_080098Link to BLAST:NP_080098.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080098.1 334 Q9DBU6 334 100% 0 0

Chromosomal Locations for CCDS 17394.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 66994519 66994712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66996465 66996590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67082536 67082709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67180829 67180865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67206426 67206477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67290347 67290415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67349909 67350015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67355474 67355626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67356221 67356313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGGGACGCCGGTCTTCAGACACTGAAGAGGAAAGCAGAAGCAAGAGGAAAAAGAAACACCGGAGGCGCT
CGTCTTCAAGCAGCTCTTCAGACAGCAGGACATACAGCCGCAAGAAGGGCGGGAGGAGGCCGAGGTCCGA
CTCAAGGTCCTGGTCTAGAGACCGCCAGCTTCGCTCGCATTCTTATGAGAGAAGACGCAGGCGCAGATCA
AGCAGCAGCTCTTCTTATGGCTCCAGAAGGAAAAGAAGTCGCAGTCGTTCCAGGGGCCGAGGGAAACCCT
ATAGAGTTCAAAGGTCTCGGTCAAAAAGCAGAACCAGAAGGTCCAGGTCAAGGCCTCGTCCACGCTCACA
TAGTAGAAGCAGTGAAAGATCCAGTCACAGAAGAACCCGTAGCAGGTCCAGGGACAGAGACAGACGTAAA
GTCCGGGACAAAGAGAAAAGAGAAAAGGAGAAGGATAAAGGCAAAGACAAAGAAGTGCACAGCATCAAAC
GCGGGGATTCTGGAAACATCAAAGCTGGATTAGAACATCTGCCTCCAGCTGAGCAGGCCAAAGCCAGACT
GCAATTGGTCCTTGAAGCTGCTGCAAAAGCTGATGAAGCATTAAAAGCCAAAGAAAGGAGTGAGGAAGAA
GCAAAGAGAAGAAAAGAAGAAGACCAAGCCACCCTGGTAGAACAAGTCAAAAGAGTAAAGGAAATCGAAG
CAATTGAAAGTGATTCTTTTGTTCAGCAGACATTCAGATCAAGTAAAGACGTCAAAAAGGCAGTAGAACC
AAGTGAAGTGCAGCATGTGACTGCGGCATCAGGACCAGCATCCGCAGCTGCTGAGCCACCCAGCACTGGA
AAGGAAATAGACCCTGACAGCATCCCCACGGCTATCAAGTACCAAGATGACAATTCTCTAGCTCATCCAA
ATCTATTTATTGAAAAGGCCGAGGCTGAAGAAAAGTGGTTCAAGAGATTAATCGCTCTCCGACAAGAAAG
GCTGATGGGCAGTCCCGTGGCCTAA

Translation (334 aa):
MGRRSSDTEEESRSKRKKKHRRRSSSSSSSDSRTYSRKKGGRRPRSDSRSWSRDRQLRSHSYERRRRRRS
SSSSSYGSRRKRSRSRSRGRGKPYRVQRSRSKSRTRRSRSRPRPRSHSRSSERSSHRRTRSRSRDRDRRK
VRDKEKREKEKDKGKDKEVHSIKRGDSGNIKAGLEHLPPAEQAKARLQLVLEAAAKADEALKAKERSEEE
AKRRKEEDQATLVEQVKRVKEIEAIESDSFVQQTFRSSKDVKKAVEPSEVQHVTAASGPASAAAEPPSTG
KEIDPDSIPTAIKYQDDNSLAHPNLFIEKAEAEEKWFKRLIALRQERLMGSPVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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