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Report for CCDS17449.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17449.1 Public Mus musculus 3 Cd1d1 23 108 98 CCDS HistoryNCBI Gene:12479Re-query CCDS DB by CCDS ID:17449.1Re-query CCDS DB by GeneID:12479See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17449.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029717.3 ENSMUSP00000029717.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029717.3Link to Ensembl Protein Viewer:ENSMUSP00000029717.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000029717Re-query CCDS DB by Protein ID:ENSMUSP00000029717
Original member NCBI NM_007639.3 NP_031665.2 Updated not alive Link to Nucleotide Sequence:NM_007639.3Link to Protein Sequence:NP_031665.2Re-query CCDS DB by Nucleotide ID:NM_007639Re-query CCDS DB by Protein ID:NP_031665
Current member NCBI NM_007639.4 NP_031665.2 Accepted alive Link to Nucleotide Sequence:NM_007639.4Link to Protein Sequence:NP_031665.2Re-query CCDS DB by Nucleotide ID:NM_007639Re-query CCDS DB by Protein ID:NP_031665Link to BLAST:NP_031665.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031665.2 336 P11609 336 99.7024% 0 1

Chromosomal Locations for CCDS 17449.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 86996580 86996601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 86996690 86996786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 86997338 86997616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 86998072 86998350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 86998633 86998905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 86999192 86999252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGCGGTACCTACCATGGCTGTTGCTGTGGGCATTCCTACAGGTCTGGGGACAATCTGAAGCCCAGCAAA
AGAATTACACCTTCCGCTGCCTGCAGATGTCTTCCTTTGCAAACAGAAGCTGGTCCCGCACAGACAGCGT
GGTCTGGCTGGGGGATCTGCAGACTCACCGTTGGAGTAATGACTCAGCCACCATCAGCTTCACGAAGCCA
TGGTCCCAGGGCAAGTTGAGTAACCAGCAGTGGGAGAAGTTGCAGCATATGTTTCAAGTCTATCGAGTCA
GCTTTACCAGGGACATACAGGAATTAGTCAAAATGATGTCACCTAAAGAAGACTATCCCATTGAGATCCA
GCTGTCTGCGGGCTGTGAAATGTACCCTGGGAATGCTTCGGAAAGCTTTTTACACGTAGCATTTCAAGGA
AAATATGTCGTGAGATTCTGGGGAACGTCCTGGCAGACAGTCCCAGGGGCCCCATCTTGGTTAGACTTGC
CCATCAAAGTGCTCAACGCTGATCAAGGGACAAGTGCAACCGTGCAGATGCTCCTGAATGACACCTGCCC
CCTATTTGTCCGTGGTCTCCTAGAGGCAGGGAAGTCAGACCTAGAGAAGCAAGAGAAGCCAGTGGCCTGG
TTGTCCAGTGTCCCCAGCTCTGCACATGGCCATAGGCAGCTGGTGTGTCATGTCTCTGGCTTCTACCCAA
AACCTGTGTGGGTGATGTGGATGCGGGGTGACCAGGAGCAACAGGGTACTCACAGAGGTGATTTCCTGCC
AAATGCTGATGAGACATGGTATCTTCAAGCAACCCTGGATGTGGAGGCTGGAGAGGAAGCTGGCCTGGCC
TGCAGGGTGAAGCACAGCAGCCTAGGAGGACAGGATATCATCCTCTACTGGGATGCCAGGCAAGCACCCG
TGGGCCTGATCGTCTTCATAGTACTGATCATGCTAGTGGTGGTGGGTGCTGTAGTCTACTATATCTGGAG
AAGGAGAAGCGCTTATCAAGACATCCGGTGA

Translation (336 aa):
MRYLPWLLLWAFLQVWGQSEAQQKNYTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKP
WSQGKLSNQQWEKLQHMFQVYRVSFTRDIQELVKMMSPKEDYPIEIQLSAGCEMYPGNASESFLHVAFQG
KYVVRFWGTSWQTVPGAPSWLDLPIKVLNADQGTSATVQMLLNDTCPLFVRGLLEAGKSDLEKQEKPVAW
LSSVPSSAHGHRQLVCHVSGFYPKPVWVMWMRGDQEQQGTHRGDFLPNADETWYLQATLDVEAGEEAGLA
CRVKHSSLGGQDIILYWDARQAPVGLIVFIVLIMLVVVGAVVYYIWRRRSAYQDIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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