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Report for CCDS17492.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17492.1 Public Mus musculus 3 Entrep3 23 108 98 CCDS HistoryNCBI Gene:68521Re-query CCDS DB by CCDS ID:17492.1Re-query CCDS DB by GeneID:68521See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17492.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041913.12 ENSMUSP00000039261.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041913.12Link to Ensembl Protein Viewer:ENSMUSP00000039261.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000041913Re-query CCDS DB by Protein ID:ENSMUSP00000039261
Original member Current member NCBI NM_001014995.2 NP_001014995.1 Accepted alive Link to Nucleotide Sequence:NM_001014995.2Link to Protein Sequence:NP_001014995.1Re-query CCDS DB by Nucleotide ID:NM_001014995Re-query CCDS DB by Protein ID:NP_001014995Link to BLAST:NP_001014995.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001014995.1 669 Q5HZJ5 669 100% 0 0

Chromosomal Locations for CCDS 17492.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89183724 89183948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89184152 89184208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89184413 89184523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89184630 89184749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89184889 89184996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89185434 89185609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89185734 89185833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89186779 89186848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89187059 89187604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89188076 89188144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89188223 89188476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89188566 89188739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2010 nt):
ATGATGCCCTCGCCCAGTGACTCCAGTCGCTCGCTGACCAGCCGGCCCAGTACCCGGGGCCTTACCCACC
TCCGCCTCCACCGACCCTGGCTCCAGGCCCTGCTCACGTTGGGGCTGGCCCAGGTGCTCTTGGGCATCCT
GGTGATAACCTTCAGCATGGTGGCCTCCTCTGTCACCACCACCGAGAGCATCAAGAGGTCCTGCCCATCT
TGGGCTGGGTTCTCGCTGGCGTTCTCCGGGTTGGTTGGCATTGTGTCCTGGAAGCGGCCATTCACTCTAG
TGATCTCTTTCTTCTCCTTGCTTTCGGTGCTCTGTGTCATGCTTAGCATGGCTGGCTCTGTTCTCTCCTG
TAAGAATGCTCAGCTGGCTCGGGACTTCCGAGAGTGCTCCATGGAAGGGAAGGTCTGTGTATGCTGCCCA
CCTATCCCCCTACACAGACCTTGCCCAGAATGGGGCCAGGAGCTGAAAGTTGCCCTCAACTCCACCTGTG
ATGAAGCCAGAGGGGCCCTCAAGAACCTGCTCTTCAGTGTCTGTGGCCTTACCATTTGTGCTGCAATAAT
CTGTACCCTCTCTGCTATTGTCTGCTGTGTCCAGATCTTCTCCCTGGATCTGGTGCATATGCAGCTTGCC
CCTGAACGGTCAGTCTCAGGCCCCCTAGGGCCCCTGGCGTGTACATCCTCGCCTCCAGCTCCTCTCCTAC
ACACCATGCTGGACTTGGAGGAATTTGTCCCGCCTGTGCCCCCACCACCCTACTACCCTCCAGAGTACAC
CTGCAGTTCAGAGACAGATGCACAAAGCATCACGTATAATGGCTCCATGGATAGCCCAGTGCCCTTGTAT
CCTACTGACTGCCCCCCTTCTTACGAGGCCGTCATGGGGCTGCGAAGAGACAGCCAGGCCACTCTGTTTG
ACCCTCAGCTTCACGATGGCTCCTGTGTCTGTGAGCGGGTGGCCTCCATTGTGGACGTGTCCATGGACAG
TGGGTCCCTGGTGTTGTCTGCCATTGGCGACCTCCCCGGGGGCTCTAGCCCATCAGAAGACTCATGCCTG
CTGGAACTCCAGGGCTCTGTGCGCTCCGTCGATTATGTGCTCTTCCGCTCCATCCAGCGCAGCCGCGCAG
GCTACTGCCTTAGCCTGGACTGCGGCCTCCGGGGTCCCTTTGAAGACAGTCCCTTGCCAAGGCGACCCCC
ACGGGCTGCCCGCTCCTATTCCTGCTCAGCCCCTGAAGCCCCACCCCCACTGGGTGCCCCCACAGCTGCT
CGCAGTTGCCACCGGTTAGAAGGCTGGCCGCCCTGGGTGGGACCTTGTTTCCCCGAGCTGAGGCGGCGGG
TCCCCCGAGGAGGCAGCCGCTCAGCTGCACCCCCTCCTGCCCGAGCACCAGCTCGACGCTTCAGTGATAG
CTCAGGTTCCCTCACCCCACCCGGACACCGACCTCCTCACCGGACACCTCCTCCACCACTGCTGCTGCCC
AGGTCTCACAGCGACCCTGGCATTACCACCTCCAGCGACATCGCTGACTTCAGGGACCTTTATACCAAAG
TGCTTGAGGAAGAAGCTGCCTCTGTCTCCTCTGCAGACACAGGGCTCTGCTCTGAAGCCTGCCTTTTCCG
TCTAGCCCGCTGCCCTTCCCCCAAGTTGCTACGTGCTCGCTCAGCCGAGAAACGCCGCCCAGTGCCCACC
TTCCAGAAGGTTCCCCTGCCTTCAGGTCCTACACCTGCCCACTCTCTAGGGGACCTGAAAGGAAGCTGGC
CAGGCCGGGGCCTAGTCACTCGTTTCCTCCAGCTGTCTAGGAGGTCTCCAGACCCTACAGGAACTGGAGC
CCATGGATATAAGCAAGTGCGCAGGAGCCCATGGGGGCGACCAGGTCGAGAGAGCCTCCACCTTCGCAGC
TGTGGTGATTTGAGCTCTGGCTCCTCCCTAAGGCGACTCTTGTCTGCCCGCAGGCTAGAGCATGGCATCC
GCCCACACAGCCTCAGCCTCAATGGAGGCAGCCGGGAGACTGGGCTCTGA

Translation (669 aa):
MMPSPSDSSRSLTSRPSTRGLTHLRLHRPWLQALLTLGLAQVLLGILVITFSMVASSVTTTESIKRSCPS
WAGFSLAFSGLVGIVSWKRPFTLVISFFSLLSVLCVMLSMAGSVLSCKNAQLARDFRECSMEGKVCVCCP
PIPLHRPCPEWGQELKVALNSTCDEARGALKNLLFSVCGLTICAAIICTLSAIVCCVQIFSLDLVHMQLA
PERSVSGPLGPLACTSSPPAPLLHTMLDLEEFVPPVPPPPYYPPEYTCSSETDAQSITYNGSMDSPVPLY
PTDCPPSYEAVMGLRRDSQATLFDPQLHDGSCVCERVASIVDVSMDSGSLVLSAIGDLPGGSSPSEDSCL
LELQGSVRSVDYVLFRSIQRSRAGYCLSLDCGLRGPFEDSPLPRRPPRAARSYSCSAPEAPPPLGAPTAA
RSCHRLEGWPPWVGPCFPELRRRVPRGGSRSAAPPPARAPARRFSDSSGSLTPPGHRPPHRTPPPPLLLP
RSHSDPGITTSSDIADFRDLYTKVLEEEAASVSSADTGLCSEACLFRLARCPSPKLLRARSAEKRRPVPT
FQKVPLPSGPTPAHSLGDLKGSWPGRGLVTRFLQLSRRSPDPTGTGAHGYKQVRRSPWGRPGRESLHLRS
CGDLSSGSSLRRLLSARRLEHGIRPHSLSLNGGSRETGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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