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Report for CCDS17697.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17697.1 Public Mus musculus 3 Rsbn1 23 108 98 CCDS HistoryNCBI Gene:229675Re-query CCDS DB by CCDS ID:17697.1Re-query CCDS DB by GeneID:229675See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17697.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051139.12 ENSMUSP00000058934.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051139.12Link to Ensembl Protein Viewer:ENSMUSP00000058934.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000051139Re-query CCDS DB by Protein ID:ENSMUSP00000058934
Original member Current member EBI ENSMUST00000068879.10 ENSMUSP00000069246.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068879.10Link to Ensembl Protein Viewer:ENSMUSP00000069246.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000068879Re-query CCDS DB by Protein ID:ENSMUSP00000069246
Original member Current member NCBI NM_001356556.1 NP_001343485.1 Accepted alive Link to Nucleotide Sequence:NM_001356556.1Link to Protein Sequence:NP_001343485.1Re-query CCDS DB by Nucleotide ID:NM_001356556Re-query CCDS DB by Protein ID:NP_001343485Link to BLAST:NP_001343485.1
Original member Current member NCBI NM_172684.3 NP_766272.2 Accepted alive Link to Nucleotide Sequence:NM_172684.3Link to Protein Sequence:NP_766272.2Re-query CCDS DB by Nucleotide ID:NM_172684Re-query CCDS DB by Protein ID:NP_766272Link to BLAST:NP_766272.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343485.1 795 Q80T69 795 100% 0 0
NP_766272.2 795 Q80T69 795 100% 0 0

Chromosomal Locations for CCDS 17697.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 103914451 103915153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103928351 103929024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103953637 103953774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103954105 103954247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103960003 103960170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103961473 103961581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103962160 103962612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2388 nt):
ATGTTCAGGTCTACGAGAACGACCGATCAGTGGAGGGTGGGGGAGAGACTCCAATGCCCAGCGGGCCATG
CG
CGGGCAGCGCTTGCGCGAACCGCGGACGGGGGGGCGGTCGGGCCATTTAAATGTGTGTTTGTGGGTGA
A
ATGGCTGCGCAGGTCGGAGCGGTTCGCGTAGTACGGGCGGTGGCGGCGCAGGAGGAGCCGGACAAAGAA
GGG
AAGGAGAAACCCCATGTTGGGGTTTCGCCGCGGGGAGTGAAGCGGCAGCGCCGGGCGAGCAGCGGGG
GT
TCTCAGGAGAAGCGGGGGCGGCCGAGCCAGGACCCCCCTCTCGCTCCCCCTCATCGGCGGCGTCGTAG
C
CGCCAACATCCCGGGCCGCTGCCTCCAACGAATGCCGCCCCAACCGTCCCGGGCCCTGTTGAACCTCTG
CTC
CTGCCGCCTCCGCCGCCACCGTCGCTGGCACCCGCCGGGCCCACTGTCGCTGCCCCGCTCCCGGCCC
CG
GGCACCTCGGCCCTCTTCACCTTCTCGCCTCTGACGGTGAGCGCGGCCGGGCCCAAGCATAAGGGCCA
C
AAGGAGCGGCACAAGCACCATCACCACCGCGGCTCCGATGGTGACCCCGGCGCCTGCGTTCCGGGCGAT
CTC
AAGCACAAGGACAAGCAGGAAAACGGCGAAAGGAGCGGAGGGGTGCCTCTGATCAAGGCCCCCAAGA
GA
GAAACAGCAGATGAAAATGGTAAAACCCAGAGAGCTGATGATTTTGTCTTGAAGAAAATAAAGAAGAA
A
AAGAAAAAGAAACATCGAGAAGACATGAGAGGAAGACGCCTTAAAATGTACAATAAGGAAGTACAAACC
GTC
TGTGCTGGCCTGACCCGCATCAGCAAAGAAATTCTCACCCAAGGACAGCTAAATAGCACTTCAGGAG
TT
AATAAGGAGTCCTTCAGGTATTTGAAGGATGAACAGCTGTGCAGATTAAATTTGGGCATGCAAGAATA
T
CGGGTGCCCCAGGGAGTACAGACACCTTTTACAACGCACCAAGAACATTCTATTCGCAGAAATTTCTTA
AAA
ACAGGTACTAAATTTAGCAACTTTATTCACGAAGAACACCAGTCCAATGGGGGTGCTCTTGTCCTTC
AT
GCATACATGGACGAACTCTCATTTTTGTCTCCAATGGAGATGGAGAGATTTTCTGAGGAGTTTCTTGC
T
TTGACATTCAGTGAAAATGAGAAAAACGCTGCGTACTATGCGTTAGCAATAGTGCATGGAGCGGCCGCT
TAT
CTCCCAGACTTCTTGGACTACTTTGCTTTTAATTTTCCCAACACTCCAGTGAAAATGGAAATTTTGG
GC
AAGAAAGATATTGAAACAACCACCATTTCAAATTTTCATACTCAGGTCAACAGGACATATTGCTGTGG
T
ACCTACCGAGCAGGTCCTATGCGGCAGATAAGTCTTGTTGGAGCAGTAGATGAAGAAGTTGGTGATTAT
TTC
CCAGAGTTCCTAGATATGCTAGAAGAATCACCATTTCTGAAAATGACTTTGCCCTGGGGTACACTTT
CC
AGCCTCCAGCTACAATGTAGGTCTCAGAGCGATGACGGGCCTATAATGTGGGTGAGGCCAGGAGAACA
G
ATGATCCCTACAGCAGATATGCCAAAGTCACCCTTCAAAAGACGACGATCAATGAATGAAATTAAAAAT
CTC
CAGTACCTACCTCGGACAAGTGAACCCCGAGAAGTCCTCTTTGAAGACAGGACCAGAGCTCATGCTG
AT
CATGTAGGTCAGGGGTTTGACTGGCAAAGTACGGCTGCTGTTGGGGTTTTGAAGGCTGTACAATTCGG
T
GAATGGAGTGATCAGCCTCGCATAACCAAAGATGTGATTTGTTTTCATGCTGAGGATTTTACTGATGTT
GTA
CAGAGACTTCAGTTAGACCTTCATGAACCTCCAGTTTCTCAGTGTGTACAGTGGGTGGATGAAGCAA
AA
CTAAACCAAATGAGGCGAGAAGGCATTCGCTATGCTAGAATTCAGCTTTGCGACAATGATATCTACTT
C
ATCCCTAGAAATGTCATTCATCAGTTCAAAACAGTGTCAGCAGTATGCAGCCTAGCCTGGCATATAAGG
CTT
AAACAATACCACCCTGTTGTGGAAACCGCTCAAAACACAGAGAGCAATTCCAACATGGATTGTGGTT
TA
GAAGTTGACTCCCAGTGTGTGAGAATAAAAACTGAATCTGAGGAAAGATGCACAGAGATGCAGCTTTT
G
ACAACTGCTTCACCGTCTTTCCCACCTCCATCAGAACTTCATCTACAGGATCTGAAGACTCAGCCTCTT
CCA
GTTTTCAAGGTGGAGAGCAGACTGGACTCTGACCAGCAACACAGTCTGCAGGCACATCCAAGCACTC
CT
GTGTGA


Translation (795 aa):
MFRSTRTTDQWRVGERLQCPAGHARAALARTADGGAVGPFKCVFVGEMAAQVGAVRVVRAVAAQEEPDKE
G
KEKPHVGVSPRGVKRQRRASSGGSQEKRGRPSQDPPLAPPHRRRRSRQHPGPLPPTNAAPTVPGPVEPL
L
LPPPPPPSLAPAGPTVAAPLPAPGTSALFTFSPLTVSAAGPKHKGHKERHKHHHHRGSDGDPGACVPGD
L
KHKDKQENGERSGGVPLIKAPKR
ETADENGKTQRADDFVLKKIKKKKKKKHREDMRGRRLKMYNKEVQT
V
CAGLTRISKEILTQGQLNSTSGVNKESFRYLKDEQLCRLNLGMQEYRVPQGVQTPFTTHQEHSIRRNFL
K
TGTKFSNFIHEEHQSNGGALVLHAYMDELSFLSPMEMERFSEEFLALTFSENEKNAAYYALAIVHGAAA
Y
LPDFLDYFAFNFPNTPVKMEILGKKDIETTTISNFHTQ
VNRTYCCGTYRAGPMRQISLVGAVDEEVGDY
F
PEFLDMLEESPFLK
MTLPWGTLSSLQLQCRSQSDDGPIMWVRPGEQMIPTADMPKSPFKRRRSMNEIKN
L
QYLPRTSEPREVLFEDRTRAHADHVGQGFDWQSTAAVGVLKAVQFGE
WSDQPRITKDVICFHAEDFTDV
V
QRLQLDLHEPPVSQ
CVQWVDEAKLNQMRREGIRYARIQLCDNDIYFIPRNVIHQFKTVSAVCSLAWHIR
L
KQYHPVVETAQNTESNSNMDCGLEVDSQCVRIKTESEERCTEMQLLTTASPSFPPPSELHLQDLKTQPL
P
VFKVESRLDSDQQHSLQAHPSTPV




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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