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Report for CCDS17703.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17703.1 Public Mus musculus 3 Ppm1j 23 108 98 CCDS HistoryNCBI Gene:71887Re-query CCDS DB by CCDS ID:17703.1Re-query CCDS DB by GeneID:71887See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17703.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002298.6 ENSMUSP00000002298.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002298.6Link to Ensembl Protein Viewer:ENSMUSP00000002298.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000002298Re-query CCDS DB by Protein ID:ENSMUSP00000002298
Original member Current member NCBI NM_027982.2 NP_082258.2 Accepted alive Link to Nucleotide Sequence:NM_027982.2Link to Protein Sequence:NP_082258.2Re-query CCDS DB by Nucleotide ID:NM_027982Re-query CCDS DB by Protein ID:NP_082258Link to BLAST:NP_082258.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082258.2 507 Q149T7 507 100% 0 0

Chromosomal Locations for CCDS 17703.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 104781087 104781409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104782601 104782721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104783127 104783414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104783654 104783766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104784043 104784127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104784634 104784752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104784956 104785019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104785186 104785293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104785398 104785549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104785702 104785852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1524 nt):
ATGCTAAACCGGGTGCGCTCAGCCGTGGCGCACCTGGTGAGCTCGGGTGGCACTTCTTCCCAGCGCTCCA
AGTCCCCAGATCTGCCCAACGCTACCTCAGCGCCTCCCGCCGCCCAAGAAACACCTAAGAGTTCCCGGGA
GAAGCCTGGGAACCAGGTCGGCGCGCCCCAGAAGACCGCGGAGACTACTGTGAGCTTCTCTCGACCCACC
TTTCTGCAGCTGAGCCCCGGAGGGCTGCGGCGCGCCGACGACCACGCAGGCCGGGCTGTGCAAAGCCCCC
CAGACACCGGCCGCCGCCTGCCCTGGAGCACAGGCTATGCCGAGGTCATCAATGCTGGCAAGAGCAGGCA
CAATGAGGATCAGGCTTGCTGCGAGGTTGTGTATGTGGAAAGTCGGAGGAGCAGGAGCGTTACAGGGGTC
TCCAGGGAGCCTAGCCATAACCAGGGCTTCTGCTTTTACTACTGGGGCCTGTTTGATGGGCACGCTGGTG
GAGGAGCAGCTGAAATGGCCTCCCGGCTCCTGCATCGCCACATCCGGGAACAGCTCAAGGATCTAGTAGA
AATACTTAAGGATCCCTTGCCGCCTCCCCTCTGTCTCCCATCCACTCCTGGAACCCCAGGAGCCCCCAGT
CCTTCACAGTTGGTTAGCCCTCAATCCTGCTGGTCTCCACAGAAGGAAGTGACCCATGACAGCCTGATAG
TAGGAGCCATTGAGAATGCCTTCCATCTCATGGATGAGCAGATGGCTCGGGAGCGGCGTGGCCACCAAGT
GGAAGGGGGCTGCTGTGCACTAGTGGTGCTGTACCTGCTAGGCAAGATGTATGTGGCTAACGCAGGTGAC
AGCAGGGCCATCATTGTCCGAAATGGGGAGATCATTCCGATGTCCCGGGAGTTCACACCAGAGACGGAGC
GCCAGCGTCTTCAGCTGCTTGGCTTCCTGAAACCAGAACTGCTGGGCAGTGAGTTCACCCACCTTGAATT
TCCCCGAAGAGTTCAGCCCAAGGAACTAGGGCAGAGGATGCTGTACAGGGACCAGAATATGACTGGCTGG
GCCTACAAAAAGATTGAGGTGGAGGATCTCAGGTTTCCTCTGGTCTGTGGGGAGGGCAAAAAGGCCCGGG
TAATGGCTACCATTGGGGTGACACGGGGCTTGGGAGACCACAACCTTAAGGTCTGCAGCTCTACTCTGTC
CATCAAGCCTTTCCTCTCCTGCTTTCCTGAAGTACGAGTGTATGATCTGACGCAGTATGAGCACTGTCCA
GATGATGTGCTGGTCCTGGGAACAGATGGCTTGTGGGATGTGACCAATGACTCTGAGGTAGCTGCCACTG
TGGACAGGGTGCTGTCATCCTATGAGCCCAATGATCCCAGCAGGTATACAGCTCTGGCCCAAGCTCTGGT
CCTGGGGGCCCGGGGAATCCCCCGGGACCGTGGCTGGCGTCTCCCAAACAACAAGCTGGGTTCCGGGGAT
GACATCTCGGTCTTCGTCATCCCCCTGGGCGGGCCAGGCAGCAGTTACTCCTGA

Translation (507 aa):
MLNRVRSAVAHLVSSGGTSSQRSKSPDLPNATSAPPAAQETPKSSREKPGNQVGAPQKTAETTVSFSRPT
FLQLSPGGLRRADDHAGRAVQSPPDTGRRLPWSTGYAEVINAGKSRHNEDQACCEVVYVESRRSRSVTGV
SREPSHNQGFCFYYWGLFDGHAGGGAAEMASRLLHRHIREQLKDLVEILKDPLPPPLCLPSTPGTPGAPS
PSQLVSPQSCWSPQKEVTHDSLIVGAIENAFHLMDEQMARERRGHQVEGGCCALVVLYLLGKMYVANAGD
SRAIIVRNGEIIPMSREFTPETERQRLQLLGFLKPELLGSEFTHLEFPRRVQPKELGQRMLYRDQNMTGW
AYKKIEVEDLRFPLVCGEGKKARVMATIGVTRGLGDHNLKVCSSTLSIKPFLSCFPEVRVYDLTQYEHCP
DDVLVLGTDGLWDVTNDSEVAATVDRVLSSYEPNDPSRYTALAQALVLGARGIPRDRGWRLPNNKLGSGD
DISVFVIPLGGPGSSYS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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