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Report for CCDS17811.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17811.2 Public Mus musculus 3 Fnbp1l 23 108 98 CCDS HistoryNCBI Gene:214459Re-query CCDS DB by CCDS ID:17811.2Re-query CCDS DB by GeneID:214459See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 17811.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data. The update adds a Fes/CIP4 homology domain (FCH) to the protein.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 17811.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162409.7 ENSMUSP00000124439.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162409.7Link to Ensembl Protein Viewer:ENSMUSP00000124439.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162409Re-query CCDS DB by Protein ID:ENSMUSP00000124439
Original member Current member NCBI NM_153118.3 NP_694758.2 Accepted alive Link to Nucleotide Sequence:NM_153118.3Link to Protein Sequence:NP_694758.2Re-query CCDS DB by Nucleotide ID:NM_153118Re-query CCDS DB by Protein ID:NP_694758Link to BLAST:NP_694758.2

Chromosomal Locations for CCDS 17811.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 122542105 122542283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122544544 122544692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122546300 122546394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122546943 122547075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122549156 122549265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122557903 122558106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122559020 122559166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122560833 122560961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122563835 122563939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122568753 122568815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122569595 122569742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122570891 122570944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122590128 122590243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122619530 122619553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGAGCTGGGGCACCGAGCTGTGGGATCAGTTCGACAGCTTAGATAAGCATACCCAATGGGGAATTGACT
TCTTGGAAAGATATGCCAAGTTTGTTAAAGAGAGAATTGAAATTGAACAGAACTATGCGAAACAATTGAG
AAATCTGGTTAAGAAGTACTGTCCCAAACGCTCCTCCAAAGATGAAGAGCCAAGGTTTACTTCATGTATC
GCCTTTTTTAACATCCTTAATGAGTTAAACGACTATGCAGGACAGCGAGAGGTAGTAGCAGAAGAAATGG
CGCACAGAGTATATGGTGAATTAATGAGATATGCCCATGATCTGAAAACGGAAAGAAAAATGCATCTCCA
AGAAGGACGAAAAGCTCAACAATACCTTGACATGTGTTGGAAACAGATGGATAATAGTAAAAAGAAGTTT
GAAAGAGAATGTAGAGAAGCGGAGAAAGCACAGCAGAGTTATGAGAGGTTGGATAATGACACCAATGCCA
CCAAGGCAGATGTTGAAAAGGCCAAACAGCAGTTGAACCTTCGTACGCATATGGCTGATGAGAATAAAAA
TGAATATGCTGCACAGCTGCAAAATTTTAATGGAGAACAGCACAAACATTTTTATGTGGTAATTCCTCAG
ATTTACAAGCAACTACAAGAAATGGATGAACGAAGGACAATTAAACTCAGTGAATGTTACAGAGGGTTTG
CAGACTCAGAACGCAAAGTTATTCCTATCATCTCAAAATGTTTAGAAGGAATGATTCTTGCAGCAAAATC
AGTTGATGAAAGAAGAGATTCTCAAATGGTAGTAGACTCCTTCAAGTCTGGCTTTGAACCTCCAGGAGAC
TTTCCATTTGAAGATTACAGTCAGCACATTTACAGAACCATTTCTGACGGGACCATCAGTGCAGCCAAAC
AGGAGAGTGGCAAGATGGATTCCAAGTCCACAGTGGGGAAGGCCAAGGGCAAGCTGTGGCTCTTTGGAAA
GAAGCCAAAGGGCCCAGCACTAGAAGATTTCAGTCATTTGCCACCAGAGCAGAGGCGGAAGAAGTTACAG
CAGCGCATTGACGAGCTTAACCGAGGGCTGCAGAAGGAAGCAGACCAAAAAGAAGCACTCAACAAAATGA
AGGATGTGTATGAGAAAAATCCACAGATGGGGGATCCAGGAAGTCTGCAGCCTAAATTAGCAGAGACCAT
GAATAACATTGACCGCTTACGAATGGAAATCCACAAGAATGAGGCATGGCTCTCTGAAGTTGAAGGCAAA
ACAGGTATAAGAGGTGACAGAAGACACAGCAGTGACATAAATCATCTTGTGACACAGGGACGAGAAAGCC
CTGAGGGAAGTTACACTGATGATGCAAACCAAGAAGTTCGTGGGCCACCCCAACAACATGGCCACCACAG
TGAGTTTGATGATGAGTTCGAAGATGATGATCCCCTGCCTGCTATTGGACACTGCAAAGCAATCTACCCT
TTTGATGGGCATAATGAAGGTACTCTGGCAATGAAAGAAGGTGAAGTTCTGTACATTATTGAGGAGGACA
AAGGTGATGGATGGACAAGAGCTCGGAGACAGAACGGTGAAGAAGGCTACGTTCCCACAACATACATAGA
TGTTACTCTAGAGAAAAGCAGTAAAGGTGCAGTAACTTATATCTAA

Translation (551 aa):
MSWGTELWDQFDSLDKHTQWGIDFLERYAKFVKERIEIEQNYAKQLRNLVKKYCPKRSSKDEEPRFTSCI
AFFNILNELNDYAGQREVVAEEMAHRVYGELMRYAHDLKTERKMHLQEGRKAQQYLDMCWKQMDNSKKKF
ERECREAEKAQQSYERLDNDTNATKADVEKAKQQLNLRTHMADENKNEYAAQLQNFNGEQHKHFYVVIPQ
IYKQLQEMDERRTIKLSECYRGFADSERKVIPIISKCLEGMILAAKSVDERRDSQMVVDSFKSGFEPPGD
FPFEDYSQHIYRTISDGTISAAKQESGKMDSKSTVGKAKGKLWLFGKKPKGPALEDFSHLPPEQRRKKLQ
QRIDELNRGLQKEADQKEALNKMKDVYEKNPQMGDPGSLQPKLAETMNNIDRLRMEIHKNEAWLSEVEGK
TGIRGDRRHSSDINHLVTQGRESPEGSYTDDANQEVRGPPQQHGHHSEFDDEFEDDDPLPAIGHCKAIYP
FDGHNEGTLAMKEGEVLYIIEEDKGDGWTRARRQNGEEGYVPTTYIDVTLEKSSKGAVTYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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