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Report for CCDS17847.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17847.1 Public Mus musculus 3 Gstcd 23 108 98 CCDS HistoryNCBI Gene:67553Re-query CCDS DB by CCDS ID:17847.1Re-query CCDS DB by GeneID:67553See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17847.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029651.10 ENSMUSP00000029651.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029651.10Link to Ensembl Protein Viewer:ENSMUSP00000029651.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029651Re-query CCDS DB by Protein ID:ENSMUSP00000029651
Original member Current member EBI ENSMUST00000080583.5 ENSMUSP00000079421.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080583.5Link to Ensembl Protein Viewer:ENSMUSP00000079421.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000080583Re-query CCDS DB by Protein ID:ENSMUSP00000079421
Original member Current member NCBI NM_001356309.1 NP_001343238.1 Accepted alive Link to Nucleotide Sequence:NM_001356309.1Link to Protein Sequence:NP_001343238.1Re-query CCDS DB by Nucleotide ID:NM_001356309Re-query CCDS DB by Protein ID:NP_001343238Link to BLAST:NP_001343238.1
Original member Current member NCBI NM_026231.3 NP_080507.2 Accepted alive Link to Nucleotide Sequence:NM_026231.3Link to Protein Sequence:NP_080507.2Re-query CCDS DB by Nucleotide ID:NM_026231Re-query CCDS DB by Protein ID:NP_080507Link to BLAST:NP_080507.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343238.1 634 Q5RL51-1 634 100% 0 0
NP_080507.2 634 Q5RL51-1 634 100% 0 0

Chromosomal Locations for CCDS 17847.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 132983083 132983219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132986385 132986454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132996166 132996196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132998825 132998958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133003664 133003792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133005388 133005432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133005560 133005675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133062566 133062659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133071900 133072151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133082039 133082506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133084576 133085004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1905 nt):
ATGAAAGGCATTAAGAAAAGTCCTACGGAGGAATCTCTGTACCTGGAGTACTCTCACCAAACAGAAGGCT
GCATCTTTCCTCTCCACACGTCTGTAACTTTGTTTTTACTATCATACTGTGAATGCAAGGTCTTTAACGT
TTGCTTAGTCCTCACTGAAGAAAGTACAGATACTTCAGACACTTCGTTCCTAAAAGAGGCACTGCCCCAG
GACCTGGAAATACAGGTTATTTCAAAGCAGGCGCTCCCTCCGATTGTCCAGAATTGCTGTTTGCCTGCAG
TGGTAGATCAACCTGACGTTTTCTGTAGGGCAGGCCTTGCTGTTGTCCTGAGACACATAATCCAAAAATC
CTATGAAGCTGAGCCCTCAAGAAAGGAAATTTTGGAACTTCTGGGTTTTAAAAAGACTTGTTTGAAAGCT
TGTGCTGAAGTTAGTCAGTGGACCAGGCTATGTGAACTCACCATCCCTTTGGCTGTTGAGAATTTTCTCC
AAGAGTCCTCTGAGCATCCCCCAACTATCCCTGAAGAAATCCTAGAGCTCGAGAGGAAGCTCAGTGAGCC
TGTCAGAGTACACAATGATGACAAACTCCGAAGACAGAAGCTGAAGCAACAGAAGGCTGCTGGCAGTGAG
CCTCCCTCCGGGAAGGGGAAAGCAAAGAGCAAGGCAAGTGCACAGAAGACACCCAAAGACTTGGCTGCTC
CCTCCAAGAGTCTGGAACTGAAGGTGGCGTTCTCAAAGCTCACAGTGCAAGAAGATGCAGCTGCTAGCAA
CAGGGAGCCTTCTCACATCAGGAAAGCAAAAGCCGCCGACCTCCCGCCTCTGGAGCACGTGTTTGCAGAA
GGACTGTACTTCACTTTGGCAGACATCGTGCTTTTGCCCTGTATTCACCACTTTTTGGTAATTATCTGCA
AGAAATTTTCAGAGAAGCTGGAACAGTTTCCACTACTAACCTCTTGGTATCAGAGGATTCAGGAAGTGCC
AAAAGTCAAAACAGCAGCTTCCAAGTGTGGGATCTACTTTCTGTATTTACCAGAATTGCTGAACTCTGCA
AGGAAACAGCCTGTGAATTCTGATGAAGTAGCAGCTGTAGATGAGCAAAGTGACCCTTTATTTATAGGAG
GACCAAGACCGACTATGACCAAGTTGATGGAAAAAGGCATTGAAGCCATGTTTTCTCCGCACCCTTGTCC
TGCTTGGACCCTTGACTGGAGCAGTCTTCCTGCTGCCGTCAGCCCGAAGGAAGGTAAAATGTCCACTGAC
CGAGCTCTGAGGAAACAGCAGCAGTTAAACAACCTTGTCTACCTGGTGCTGAATCAAGCCAAACCTGGGG
ACAGAATTGTGGATTTCTGCAGTGGCGGGGGCCATGTTGGAATTGTCCTTGCCCACATGCTGCCCTCGTG
CCAGGTTACGTTAATAGAGAACAAGGAATTATCATTAATCCGTGCTAAGAAGAGAAGTGACGAACTTGGT
TTAAGCAATATTTGGTTCATTCAAGCAAATATGGAGTATTTCACAGGAATGTTTAACATTGGGGTGGCCT
TGCACGCTTGTGGAGTGGCAACAGACATGGTGATCGAGCACTGCATCCAAACACGGGCTTCCTTCATCAC
ATGCCCCTGCTGTTACGGGTTCATTCAGAACACATCCAAGTTTAACTTCCCAAAAAGTGAAAAATTCAAG
AAAACTTTATCATACAAGGAACACATGCTCCTCTGCAGATTTGCCGATCAGACAGCTGTCCAGCTCCCAC
CCGAGAGGAGACTCATAGGGAAGCAGTGCATGGGCCTGGTGGATCTGGACCGAGCAGCAGCAGCAGGAGA
ACACGGCTACTCTGTTCAAGTGATCTCTATGGAGCCAGAGAGCTGCTCTCCCAAGAACAACATGATTGTG
GGTGTCCCCTTGTAG

Translation (634 aa):
MKGIKKSPTEESLYLEYSHQTEGCIFPLHTSVTLFLLSYCECKVFNVCLVLTEESTDTSDTSFLKEALPQ
DLEIQVISKQALPPIVQNCCLPAVVDQPDVFCRAGLAVVLRHIIQKSYEAEPSRKEILELLGFKKTCLKA
CAEVSQWTRLCELTIPLAVENFLQESSEHPPTIPEEILELERKLSEPVRVHNDDKLRRQKLKQQKAAGSE
PPSGKGKAKSKASAQKTPKDLAAPSKSLELKVAFSKLTVQEDAAASNREPSHIRKAKAADLPPLEHVFAE
GLYFTLADIVLLPCIHHFLVIICKKFSEKLEQFPLLTSWYQRIQEVPKVKTAASKCGIYFLYLPELLNSA
RKQPVNSDEVAAVDEQSDPLFIGGPRPTMTKLMEKGIEAMFSPHPCPAWTLDWSSLPAAVSPKEGKMSTD
RALRKQQQLNNLVYLVLNQAKPGDRIVDFCSGGGHVGIVLAHMLPSCQVTLIENKELSLIRAKKRSDELG
LSNIWFIQANMEYFTGMFNIGVALHACGVATDMVIEHCIQTRASFITCPCCYGFIQNTSKFNFPKSEKFK
KTLSYKEHMLLCRFADQTAVQLPPERRLIGKQCMGLVDLDRAAAAGEHGYSVQVISMEPESCSPKNNMIV
GVPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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