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Report for CCDS17852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17852.1 Public Mus musculus 3 Tacr3 23 108 98 CCDS HistoryNCBI Gene:21338Re-query CCDS DB by CCDS ID:17852.1Re-query CCDS DB by GeneID:21338See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17852.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029822.5 ENSMUSP00000029822.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029822.5Link to Ensembl Protein Viewer:ENSMUSP00000029822.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029822Re-query CCDS DB by Protein ID:ENSMUSP00000029822
Original member Current member NCBI NM_021382.6 NP_067357.1 Accepted alive Link to Nucleotide Sequence:NM_021382.6Link to Protein Sequence:NP_067357.1Re-query CCDS DB by Nucleotide ID:NM_021382Re-query CCDS DB by Protein ID:NP_067357Link to BLAST:NP_067357.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067357.1 452 P47937 452 100% 0 0

Chromosomal Locations for CCDS 17852.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 134829273 134829781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134854811 134854999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134861066 134861216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134929886 134930082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134932130 134932442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGGCCTCGGTTCCCACCGGCGAAAACTGGACGGACGGGACGGCGGGCGTGGGGTCCCATACAGGGAATC
TGAGCGCTGCGCTGGGGATCACTGAGTGGCTTGCGCTCCAGGCTGGCAACTTCTCCTCCGCGCTGGGCTT
GCCAGTGACATCCCAGGCACCTTCCCAAGTCCGGGCCAACCTGACGAACCAGTTCGTGCAGCCCTCCTGG
CGAATCGCGCTCTGGTCGCTGGCCTATGGCTTAGTGGTGGCGGTGGCAGTCTTCGGAAACCTCATCGTTA
TTTGGATCATCTTGGCCCACAAGCGCATGAGGACCGTCACCAACTATTTCCTGGTAAACCTGGCTTTCTC
CGACGCCTCCGTGGCTGCCTTCAACACCTTGGTCAATTTCATCTATGGTGTTCACAGCGAGTGGTACTTT
GGCGCCAACTACTGCCGCTTCCAGAACTTCTTTCCCATCACAGCGGTGTTTGCCAGCATCTACTCTATGA
CAGCCATTGCAGTGGACAGGTATATGGCCATTATCGATCCTTTGAAACCCAGACTATCTGCCACAGCCAC
TAAGATTGTCATCGGAAGTATTTGGATTTTGGCATTTCTACTTGCCTTCCCTCAATGTCTTTATTCCAAA
ATAAAAGTCATGCCAGGCCGTACCCTTTGCTATGTGCAGTGGCCAGAAGGTCCCAAGCAACATTTCACGT
ACCACATCATTGTTATCATCCTGGTGTACTGTTTCCCATTGCTCATCATGGGTGTCACCTACACCATCGT
TGGAATTACTCTCTGGGGAGGAGAGATCCCAGGAGACACCTGTGACAAGTACCATGAGCAGCTTAAGGCT
AAACGAAAGGTTGTAAAAATGATGATTATTGTGGTGGTGACATTTGCCATCTGCTGGCTACCCTACCATG
TGTATTTCATTCTCACTGCGATCTACCAACAGTTAAACAGGTGGAAATACATCCAGCAGGTCTACCTGGC
TAGCTTCTGGCTGGCCATGAGCTCAACCATGTACAACCCCATCATCTACTGCTGTTTGAACAAAAGATTT
CGTGCAGGCTTCAAGAGAGCATTTCGCTGGTGTCCTTTCATCCAAGTCTCCAGCTACGATGAGCTGGAGC
TCAAGACCACCAGGTTTCATCCCACACGGCAGAGCAGCCTGTACACCGTGAGCAGGATGGAGTCAGTGAC
CGTGCTGTATGACCCCAGTGAAGGGGACCCGGCCAAGTCCAGCCGCAAGAAGAGGGCGGTGCCCAGAGAC
CCCAGTGCCAATGGCTGCTCCCACAGAGAGTTCAAATCTGCCTCCACCACATCAAGTTTCATAAGCTCGC
CCTATACCTCTGTGGATGAATATTCCTAA

Translation (452 aa):
MASVPTGENWTDGTAGVGSHTGNLSAALGITEWLALQAGNFSSALGLPVTSQAPSQVRANLTNQFVQPSW
RIALWSLAYGLVVAVAVFGNLIVIWIILAHKRMRTVTNYFLVNLAFSDASVAAFNTLVNFIYGVHSEWYF
GANYCRFQNFFPITAVFASIYSMTAIAVDRYMAIIDPLKPRLSATATKIVIGSIWILAFLLAFPQCLYSK
IKVMPGRTLCYVQWPEGPKQHFTYHIIVIILVYCFPLLIMGVTYTIVGITLWGGEIPGDTCDKYHEQLKA
KRKVVKMMIIVVVTFAICWLPYHVYFILTAIYQQLNRWKYIQQVYLASFWLAMSSTMYNPIIYCCLNKRF
RAGFKRAFRWCPFIQVSSYDELELKTTRFHPTRQSSLYTVSRMESVTVLYDPSEGDPAKSSRKKRAVPRD
PSANGCSHREFKSASTTSSFISSPYTSVDEYS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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