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Report for CCDS17861.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17861.1 Public Mus musculus 3 Emcn 23 108 98 CCDS HistoryNCBI Gene:59308Re-query CCDS DB by CCDS ID:17861.1Re-query CCDS DB by GeneID:59308See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17861.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119475.5 ENSMUSP00000114102.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119475.5Link to Ensembl Protein Viewer:ENSMUSP00000114102.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119475Re-query CCDS DB by Protein ID:ENSMUSP00000114102
Original member Current member NCBI NM_016885.2 NP_058581.2 Accepted alive Link to Nucleotide Sequence:NM_016885.2Link to Protein Sequence:NP_058581.2Re-query CCDS DB by Nucleotide ID:NM_016885Re-query CCDS DB by Protein ID:NP_058581Link to BLAST:NP_058581.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058581.2 248 Q9R0H2-2 248 100% 0 0

Chromosomal Locations for CCDS 17861.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 137341240 137341312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 137372728 137372850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 137379839 137379913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 137391593 137391706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 137416721 137416810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 137417046 137417099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 137418996 137419091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 137422258 137422282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 137423424 137423485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 137427305 137427339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGCGGCTGCTTCAAGCGACTGTTCTTTTCTTCCTTTTGTCCAACAGTCTCTGCCACAGTGAGGACGGCA
AAGATGTTCAGAATGACTCTATTCCAACACCGGCAGAAACTTCCACAACAAAAGCCTCTGTCACAATACC
AGGCATCGTGTCAGTGACAAATCCTAACAAACCAGCAGATGGAACACCTCCCGAAGGAACGACCAAAAGT
GACGTATCCCAAACATCTTTGGTGACAACAATTAATTCACTGACAACACCAAAACATGAAGTGGGAACAA
CAACTGAAGGTCCCCTAAGGAATGAAAGTTCCACTATGAAAATAACAGTGCCAAATACTCCAACTTCAAA
TGCTAATTCAACGCTACCAGGTTCCCAGAACAAGATTACTACTCAACTACTGGATGCCTTGCCGAAAATC
ACTGCAACATCCTCTGCATCTCTAACAACTGCACACACCATGTCACTGCTTCAAGATACTGAGGATAGGA
AGATTGCAACCACTCCATCAACCACCCCCTCCTATTCCAGTATCATTTTGCCTGTGGTTATCGCGCTGGT
TGTTATAACACTCTTGGTATTTACTCTGGTGGGTTTGTATCGAATATGCTGGAAGAGAGACCCAGGCACT
CCAGAAAACGGAAATGATCAGCCTCAGTCCGATAAAGAGAGTGTGAAGCTGCTCACTGTTAAGACAATCT
CTCATGAGTCTGGCGAACACTCTGCACAGGGGAAAACCAAGAACTGA

Translation (248 aa):
MRLLQATVLFFLLSNSLCHSEDGKDVQNDSIPTPAETSTTKASVTIPGIVSVTNPNKPADGTPPEGTTKS
DVSQTSLVTTINSLTTPKHEVGTTTEGPLRNESSTMKITVPNTPTSNANSTLPGSQNKITTQLLDALPKI
TATSSASLTTAHTMSLLQDTEDRKIATTPSTTPSYSSIILPVVIALVVITLLVFTLVGLYRICWKRDPGT
PENGNDQPQSDKESVKLLTVKTISHESGEHSAQGKTKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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