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Report for CCDS17919.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17919.1 Public Mus musculus 3 Pigk 23 108 98 CCDS HistoryNCBI Gene:329777Re-query CCDS DB by CCDS ID:17919.1Re-query CCDS DB by GeneID:329777See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17919.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159899.7 ENSMUSP00000123772.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159899.7Link to Ensembl Protein Viewer:ENSMUSP00000123772.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159899Re-query CCDS DB by Protein ID:ENSMUSP00000123772
Original member Current member NCBI NM_025662.5 NP_079938.1 Accepted alive Link to Nucleotide Sequence:NM_025662.5Link to Protein Sequence:NP_079938.1Re-query CCDS DB by Nucleotide ID:NM_025662Re-query CCDS DB by Protein ID:NP_079938Link to BLAST:NP_079938.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079938.1 395 Q9CXY9 395 100% 0 0

Chromosomal Locations for CCDS 17919.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 152714135 152714227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152717062 152717115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152722485 152722576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152738186 152738321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152740129 152740240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152742489 152742585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152744445 152744562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152744714 152744824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152747601 152747773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152766439 152766523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152785396 152785512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGGCGGCCCCCTGCTTCCTCACTCTGCGGGTGGCTACCCTGGCCGCCTTGGCGCTCTTGTCTCTCGGCA
GCTCTGCCGCTGGACACATCGAGGATCAAGCCGAACAGTTCTTTAGAAGTGGACACACAAATAACTGGGC
TGTTTTGGTGTGCACATCCCGATTCTGGTTTAACTACCGACATGTTGCAAATACTCTTTCTGTTTATAGA
AGCGTCAAGAGGCTAGGTATCCCGGACAGTCACATTGTCCTGATGCTTGCTGATGACATGGCGTGCAATG
CTCGGAACCCCAAGCCAGCCACAGTGTTCAGCCACAAGAACATGGAGCTCAATGTGTATGGAGACGATGT
GGAAGTGGACTACAGAAGCTATGAGGTAACTGTGGAGAACTTTTTAAGGGTATTGACCGGGAGGGTTCCA
CCCAGTACCCCTCGCTCAAAGCGTCTTCTTTCCGACGACAGAAGCAATATCCTCATTTATATGACAGGTC
ATGGAGGGAATGGTTTCTTGAAATTCCAAGATTCTGAAGAAATCACCAACATAGAACTTGCAGATGCGTT
TGAACAGATGTGGCAGAAGAGACGCTACAATGAGCTGCTGTTCATTATTGACACTTGCCAGGGCGCGTCC
ATGTACGAGCGGTTCTACTCTCCTAACATCATGGCCTTGGCTAGTAGCCAGGTGGGAGAGGATTCGCTGT
CGCACCAGCCTGACCCTGCGATTGGAGTTCATCTTATGGATAGGTACACGTTTTATGTCTTGGAATTTTT
GGAAGAAATTAATCCAGCTAGCCAAACTAACATGAACGACCTTTTTCAAGTGTGTCCCAAAAGTCTCTGT
GTGTCGACCCCTGGACATCGCACTGACCTTTTCCAGCGAGATCCAAAAAATGTCCTGATCACCGATTTCT
TCGGAAGTGTGCGCAAGGTGGAAATCACAACAGAGAAGATCAGTTTGCAGTGGGATTCACAAGTCGTGGA
CAGCAGTTCTAAAGAAGACGGCACGGCCGAGGAGCGCATGGGACCTCTCAAGTATGCTGAGCAGCTCCCG
GTGGCTCAGATAATACACCAGAAGCCAAAGCCGAGAGACTGGCACCCTCCCGGAGGCTTCATCCTGGGGC
TGTGGGCGCTCATCATCATGGTCTTCTTCAAGACCTATGGGATCAAGCATATGAAGTTCATTTTCTAA

Translation (395 aa):
MAAPCFLTLRVATLAALALLSLGSSAAGHIEDQAEQFFRSGHTNNWAVLVCTSRFWFNYRHVANTLSVYR
SVKRLGIPDSHIVLMLADDMACNARNPKPATVFSHKNMELNVYGDDVEVDYRSYEVTVENFLRVLTGRVP
PSTPRSKRLLSDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGAS
MYERFYSPNIMALASSQVGEDSLSHQPDPAIGVHLMDRYTFYVLEFLEEINPASQTNMNDLFQVCPKSLC
VSTPGHRTDLFQRDPKNVLITDFFGSVRKVEITTEKISLQWDSQVVDSSSKEDGTAEERMGPLKYAEQLP
VAQIIHQKPKPRDWHPPGGFILGLWALIIMVFFKTYGIKHMKFIF


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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