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Report for CCDS17961.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17961.1 Public Mus musculus 4 Cfap418 23 108 98 CCDS HistoryNCBI Gene:67157Re-query CCDS DB by CCDS ID:17961.1Re-query CCDS DB by GeneID:67157See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17961.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080517.13 ENSMUSP00000079361.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080517.13Link to Ensembl Protein Viewer:ENSMUSP00000079361.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000080517Re-query CCDS DB by Protein ID:ENSMUSP00000079361
Original member Current member NCBI NM_026005.3 NP_080281.3 Accepted alive Link to Nucleotide Sequence:NM_026005.3Link to Protein Sequence:NP_080281.3Re-query CCDS DB by Nucleotide ID:NM_026005Re-query CCDS DB by Protein ID:NP_080281Link to BLAST:NP_080281.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080281.3 209 Q3UJP5 209 100% 0 0

Chromosomal Locations for CCDS 17961.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 10874615 10874772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 10879523 10879610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 10881801 10881868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 10882407 10882472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 10893263 10893358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 10897899 10898052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGGCGAAGGACCTGGACGAACTTCTGGATGAAGTCGAGACCAAGTTCTGCAGACTCGACCCCTTGAGGC
TGGACCTGGGTGAGCGGCCCAAAGGCGACGGCGGCGGCGGCTCGCACAGCGGCGACCGGAACGGAGCCCA
GGAGAAAGAAACTCTCAGATCAACAGAAACATTTAAAAAAGAAGATGATCTTGACAGTCTTATTAATGAA
ATATTCGAGGAGCCTGACTTTGACAGAAAATCTTTTCAAAAATTTAAATCTAAATCTTCAAGTAACACAT
GTGTCAGAGCTCCCATGCAAGGCGTCAGTAAAAGTTGCAGTCCAGTGTATCTCAGTGGAAGCGCCATTCC
ATGTGGGATTGGAACAAATACTTCACAGAGAGCATGTGACCGACTGCGTTGTGTAGCCTGTGATTTCCGG
ATAGTGAGCTACAATGACTATATGTGGGACAAGTCATGTGACTACCTGTTCTTCAGAAACAACATGCCAG
AATTCCACAAACTCAAAACAAAATTGATCGAGAAGAAAGGAGCACGGGCATATGCCTGCCAGTGTAGCTG
GAGAACTGTTGAAGAACTCACTGACCTGCAGACAGATCATCAGCTTCGCTGGGTGTGTGGTAAACACTGA

Translation (209 aa):
MAKDLDELLDEVETKFCRLDPLRLDLGERPKGDGGGGSHSGDRNGAQEKETLRSTETFKKEDDLDSLINE
IFEEPDFDRKSFQKFKSKSSSNTCVRAPMQGVSKSCSPVYLSGSAIPCGIGTNTSQRACDRLRCVACDFR
IVSYNDYMWDKSCDYLFFRNNMPEFHKLKTKLIEKKGARAYACQCSWRTVEELTDLQTDHQLRWVCGKH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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