NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18164.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18164.1 Public Mus musculus 4 Stx17 23 108 98 CCDS HistoryNCBI Gene:67727Re-query CCDS DB by CCDS ID:18164.1Re-query CCDS DB by GeneID:67727See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18164.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064765.5 ENSMUSP00000068087.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064765.5Link to Ensembl Protein Viewer:ENSMUSP00000068087.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000064765Re-query CCDS DB by Protein ID:ENSMUSP00000068087
Original member Current member EBI ENSMUST00000107720.8 ENSMUSP00000103348.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107720.8Link to Ensembl Protein Viewer:ENSMUSP00000103348.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107720Re-query CCDS DB by Protein ID:ENSMUSP00000103348
Original member Current member NCBI NM_026343.2 NP_080619.2 Accepted alive Link to Nucleotide Sequence:NM_026343.2Link to Protein Sequence:NP_080619.2Re-query CCDS DB by Nucleotide ID:NM_026343Re-query CCDS DB by Protein ID:NP_080619Link to BLAST:NP_080619.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080619.2 301 Q9D0I4 301 100% 0 0

Chromosomal Locations for CCDS 18164.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 48131827 48131949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48140420 48140485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48158811 48159033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48166928 48167043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48167206 48167256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48180670 48180756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48181499 48181738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGTCTGAAGATGAGGAAAAGGTGAAGTTACGCAGGCTTGAGCCAGCGATACAGAAATTCACTAAGATCG
TGATCCCAACAGACCTGGAGAGGCTAAGAAAACACCAGATAAACATCGAGAAGTATCAGCGGTGCAGAAT
TTGGGACAAGTTGCACGAAGAGCACATCAACGCAGGGCGCACGGTTCAGCAACTGCGCTCCAATATCCGA
GAAATGGAGAAGCTTTGCTTGAAAGTGCACAAGGATGATCTGGTCCTTTTGAAGCGAATGATAGATCCTG
TCAAGGAAGCAGCAGCAACAGCTACGGCAGAGTTCCTCCAGCTCCACTTGGAATCTGTTGAAGAACTCAA
GAAACAAGTCAACGATGAAGAATTACTTCAGCCTTCTCTGACCAGATCCACAACTGTTGATGGAGTGCTC
CACACTGGGGAGGCTGAAGCTGCTTCTCAGAGTCTGACTCAGATATATGCCTTGCCTGAAATTCCTCAAG
ACCAAAATGCTGCTGAGTCCTGGGAAACCTTAGAAGCGGACTTAATTGAGCTGAGCCATCTGGTCACTGA
CATGTCCCTCCTAGTGAGTTCTCAGCAGGAGAAGATTGACAGCATTGCAGACCATGTCAACAGTGCCGCT
GTGAATGTTGAAGAGGGAACCAAAAACTTGCAGAAGGCTGCAAAATACAAGCTGGCAGCTCTGCCTGTGG
CAGGTGCACTCATCGGAGGAGTGGTAGGGGGTCCCATCGGCCTCCTCGCAGGCTTCAAAGTGGCAGGAAT
TGCAGCTGCACTTGGTGGTGGGGTGTTAGGCTTCACAGGTGGAAAATTGATACAAAGAAGGAAACAGAAA
ATGATGGAGAAGCTCACTTCCAGCTGTCCAGATCTCCCTAGCCAAAGTGACAAAAAACGCAGTTAA

Translation (301 aa):
MSEDEEKVKLRRLEPAIQKFTKIVIPTDLERLRKHQINIEKYQRCRIWDKLHEEHINAGRTVQQLRSNIR
EMEKLCLKVHKDDLVLLKRMIDPVKEAAATATAEFLQLHLESVEELKKQVNDEELLQPSLTRSTTVDGVL
HTGEAEAASQSLTQIYALPEIPQDQNAAESWETLEADLIELSHLVTDMSLLVSSQQEKIDSIADHVNSAA
VNVEEGTKNLQKAAKYKLAALPVAGALIGGVVGGPIGLLAGFKVAGIAAALGGGVLGFTGGKLIQRRKQK
MMEKLTSSCPDLPSQSDKKRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH