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Report for CCDS18178.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
18178.1 |
Public |
Mus musculus |
4 |
Rnf20 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:109331](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:18178.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:109331](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 4 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 18178.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000029989.10 |
ENSMUSP00000029989.4 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000029989.10](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000029989.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000029989](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000029989](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000167496.7 |
ENSMUSP00000128546.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000167496.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000128546.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000167496](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000128546](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001163263.1 |
NP_001156735.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001163263.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001156735.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001163263](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001156735](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001156735.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_182999.2 |
NP_892044.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_182999.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_892044.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_182999](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_892044](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_892044.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 18178.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2922 nt): ATGTCAGGAATTGGAAATAAAAGAGCAGCTGGAGAGCCGGGCACATCTATGCCTCCAGAGAAGAAGACAG CTGTTGAAGATTCAGGGACCACCGTGGAAACAATTAAGTTAGGAGGTGTCTCTTCAACGGAGGAATTAGA CATTCGAACACTGCAATCCAAGAATCGTAAGCTAGCAGAAATGCTAGATCAGCGGCAGGCCATTGAAGAT GAGCTTCGGGAACACATTGAAAAGCTGGAGCGACGCCAGGCCACTGATGATGCCTCACTGTTGATTGTGA ACCGGTACTGGAGCCAGTTTGATGAAAACATCCGCATCATCCTTAAACGTTATGATCTGGACCAGGGTTT GGGGGACCTACTCACAGAAAGGAAAGCCTTGGTTGTGCCAGAACCAGAACCTGACTCTGATAGCAATCAG GAACGCAAAGATGACCGTGAGAGAGGGGATGGGCAAGAGCCAGCTTTCTCTTTCCTTGCTACTTTGGCTA GCAGTTCCAGTGAAGAGATGGAATCTCAGCTTCAGGAGCGTGTAGAGTCCTCCCGCCGTGCTGTGTCCCA GATTGTGACTGTCTATGATAAATTGCAAGAAAAAGTGGATCTCTTATCCCGGAAACTGAACAGTGGAGAT AACCTGATAGTGGAGGAAGCAGTGCAGGAGTTGAACTCCTTCCTTGCACAAGAGAATGTGAGGCTTCAGG AGCTGACAGACCTCCTTCAGGAGAAGCATCACACCATGTCTCAGGAGTTCTGTAAGTTGCAGGGTAAAGT AGAGACAGCTGAGTCACGAGTGTCCGTCTTGGAGTCCATGATTGATGACCTGCAGTGGGATATTGACAAA ATTCGAAAAAGAGAACAGCGTCTCAACCGGCATTTGGCTGAAGTCCTAGAGCGGGTGAATTCAAAAGGCT ATAAAGTATATGGAGCGGGGAGCAGTCTCTATGGAGGCACAATCACCATCAATGCCCGGAAGTTTGAGGA AATGAATGCAGAGCTTGAGGAGAACAAAGAGTTGGCTCAGAACCGACATTGTGAGCTGGAGAAGCTTCGT CAAGACTTTGAAGAGGTCACTACACAGAATGAAAAGTTGAAGGTGGAATTGCGGAGTGCAGTGGAGGAAG TGGTTAAGGAAACCCCAGAGTATCGCTGCATGCAGTCACAGTTCTCTGTCCTGTATAACGAGAGTCTGCA GTTGAAAGCCCACTTGGATGAAGCTCGGACCCTGCTTCATGGCACCCGGGGTACTCACCAGCGCCAGGTT GAACTCATTGAGCGAGATGAGGTTAGTCTGCATAAGAAGCTGAGAACTGAAGTCATTCAGCTGGAGGATA CCTTGGCCCAGGTTCGCAAGGAGTATGAGATGTTGAGGATAGAGTTTGAGCAGACCCTTGCTGCCAATGA ACAAGCAGGCCCCATAAACCGGGAGATGCGGCATCTCATTAGCAGCCTCCAGAATCATAACCACCAGCTG AAGGGTGAAGTCCTAAGGTATAAACGGAAGCTGAGAGAGGCGCAGTCTGACCTGAACAAGACACGTCTGC GCAGTGGCAGTGCCCTCCTGCAGTCTCAGTCTAGTACTGAGGACCCCAAGGACGAGCCCACAGAGCTGAA GCAGGATTCTGAAGACCTAGCCACTCATTCCTCAGCGCTGAAGGCATCTCAGGAGGATGAAGTTAAGTCC AAACGGGATGAAGAAGAGAGAGAACGAGAAAGGAGGGAGAAAGAAAGAGAGCGAGAGCGAGAACGAGAAA AGGAAAAGGAGAGAGAACGAGAGAAACAGAAACTGAAAGAGTCAGAAAAGGAGAGAGATTCTGTTAAGGA TAAAGAGAAAGGGAAACATGATGATGGAAGGAAGAAGGAAGCAGAAATTATCAAGCAGCTGAAGATTGAA CTTAAGAAAGCACAAGAGAGCCAGAAGGAGATGAAACTACTGCTGGATATGTACCGCTCTGCCCCCAAGG AGCAGAGAGACAAAGTGCAGCTAATGGCAGCTGAGAAGAAGTCAAAGGCAGAGTTGGAGGATCTCAGACA AAGACTCAAGGATCTGGAAGATAAGGAGAAGAAAGAGAACAAGAAAATGGCTGATGAGGATGCCTTGAGG AAGATCCGGGCAGTGGAGGAGCAGATTGAATACCTGCAGAAGAAGCTGGCTATGGCCAAGCAGGAGGAAG AGGCTCTCCTGTCTGAGATGGATGTCACAGGACAGGCCTTTGAGGACATGCAGGAGCAGAACATCCGTCT GATGCAGCAGTTGCGGGAGAAGGACGATGCAAACTTCAAGCTCATGTCAGAGCGAATCAAGTCTAATCAG ATCCATAAGTTGCTTAAAGAGGAAAAGGAAGAGTTAGCTGATCAGGTTTTGACACTGAAGACTCAGGTAG ATGCCCAGTTACAGGTAGTAAGAAAACTGGAAGAGAAGGAGCACCTACTTCAGAGTAACATTGGCACAGG GGAGAAGGAGCTGGGTCTTAGGACTCAAGCCTTGGAGATGAATAAACGCAAGGCAATGGAGGCGGCCCAG CTTGCAGATGACCTCAAAGCACAGCTAGAACTGGCTCAGAAGAAGCTCCATGATTTCCAGGATGAAATCG TGGAGAACAGTGTCACCAAAGAAAAGGACTTGTTCAATTTCAAACGAGCACAGGAAGACATCTCTAGGCT TCGAAGAAAGCTAGAGACCACCAAGAAGCCAGACAATGTGCCCAAGTGTGATGAAATTCTGATGGAGGAG ATAAAGGACTACAAGGCACGGCTGACCTGCCCTTGCTGTAACATGCGTAAAAAGGATGCAGTACTTACCA AGTGTTTTCACGTTTTCTGCTTTGAGTGTGTGAAGACGCGCTATGACACTCGCCAGCGCAAGTGTCCCAA GTGTAATGCTGCTTTTGGTGCCAATGATTTCCATCGCATCTACATTGGCTGA
Translation (973 aa): MSGIGNKRAAGEPGTSMPPEKKTAVEDSGTTVETIKLGGVSSTEELDIRTLQSKNRKLAEMLDQRQAIED ELREHIEKLERRQATDDASLLIVNRYWSQFDENIRIILKRYDLDQGLGDLLTERKALVVPEPEPDSDSNQ ERKDDRERGDGQEPAFSFLATLASSSSEEMESQLQERVESSRRAVSQIVTVYDKLQEKVDLLSRKLNSGD NLIVEEAVQELNSFLAQENVRLQELTDLLQEKHHTMSQEFCKLQGKVETAESRVSVLESMIDDLQWDIDK IRKREQRLNRHLAEVLERVNSKGYKVYGAGSSLYGGTITINARKFEEMNAELEENKELAQNRHCELEKLR QDFEEVTTQNEKLKVELRSAVEEVVKETPEYRCMQSQFSVLYNESLQLKAHLDEARTLLHGTRGTHQRQV ELIERDEVSLHKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQTLAANEQAGPINREMRHLISSLQNHNHQL KGEVLRYKRKLREAQSDLNKTRLRSGSALLQSQSSTEDPKDEPTELKQDSEDLATHSSALKASQEDEVKS KRDEEERERERREKEREREREREKEKEREREKQKLKESEKERDSVKDKEKGKHDDGRKKEAEIIKQLKIE LKKAQESQKEMKLLLDMYRSAPKEQRDKVQLMAAEKKSKAELEDLRQRLKDLEDKEKKENKKMADEDALR KIRAVEEQIEYLQKKLAMAKQEEEALLSEMDVTGQAFEDMQEQNIRLMQQLREKDDANFKLMSERIKSNQ IHKLLKEEKEELADQVLTLKTQVDAQLQVVRKLEEKEHLLQSNIGTGEKELGLRTQALEMNKRKAMEAAQ LADDLKAQLELAQKKLHDFQDEIVENSVTKEKDLFNFKRAQEDISRLRRKLETTKKPDNVPKCDEILMEE IKDYKARLTCPCCNMRKKDAVLTKCFHVFCFECVKTRYDTRQRKCPKCNAAFGANDFHRIYIG
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