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Report for CCDS18301.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18301.2 Public Mus musculus 4 Bnc2 23 108 98 CCDS HistoryNCBI Gene:242509Re-query CCDS DB by CCDS ID:18301.2Re-query CCDS DB by GeneID:242509See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 18301.2
The coding region has been updated represent an alternate splicing variant and to extend the N-terminus to one that is more supported by available conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 18301.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000176691.7 ENSMUSP00000135375.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176691.7Link to Ensembl Protein Viewer:ENSMUSP00000135375.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176691Re-query CCDS DB by Protein ID:ENSMUSP00000135375
Original member NCBI NM_172870.5 NP_766458.3 Updated not alive Link to Nucleotide Sequence:NM_172870.5Link to Protein Sequence:NP_766458.3Re-query CCDS DB by Nucleotide ID:NM_172870Re-query CCDS DB by Protein ID:NP_766458
Current member NCBI NM_172870.6 NP_766458.3 Accepted alive Link to Nucleotide Sequence:NM_172870.6Link to Protein Sequence:NP_766458.3Re-query CCDS DB by Nucleotide ID:NM_172870Re-query CCDS DB by Protein ID:NP_766458Link to BLAST:NP_766458.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766458.3 1032 Q8BMQ3-2 1032 100% 0 0

Chromosomal Locations for CCDS 18301.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 84275787 84276447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84291693 84293662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84390889 84391124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84414246 84414348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84555779 84555904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84674975 84674977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3099 nt):
ATGGCACGTTTTGTGCCCTCCCCGCCTCCAAATTGCCTCAGTTACAAATCAGAGGGCAGGCTTGGTGAGC
AAGACTGGCAAGCACATTTTAAGGTCCCGTGCTGTGGGGTTGATCCATCTCAACTTGAGGCCATCCGCTG
CACATTGGTAAACTGCACGTGTGAGTGTTTCCAGCCTGGGAAGATTAACCTGCGGACGTGTGATCAGTGT
AAACATGGCTGGGTGGCACATGCCTTGGATAAACTCAGCACACAGCACCTGTACCACCCCACTCAAGTGG
AGATTGTGCAGTCCAACGTGGTGTTTGACATCAGCAGCCTGATGCTCTACGGGACGCAGGCAGTGCCTGT
GCGGCTAAAGATACTGCTAGACCGGCTCTTCAGTGTCCTGAAGCAAGAGGAAGTGCTGCACATACTACAT
GGCTTGGGCTGGACCCTGAGGGACTATGTCCGAGGATACATCCTTCAGGACGCTGCTGGCAAGGTACTGG
ACCGCTGGGCCATCATGTCTCGGGAAGAAGAAATCATCACCCTTCAGCAGTTTCTGCGGTTTGGGGAAAC
CAAATCCATCGTGGAGCTGATGGCAATTCAGGAGAAAGAAGGGCAAGCCGTGGCTGTACCATCTTCAAAG
ACAGACTCGGATATAAGGACTTTCATTGAGAGCAATAATCGCACCAGGAGTCCTAGCCTCCTTGCTCACT
TAGAGAACAGCAATCCTTCCAGCATCCATCATTTTGAAAACATACCAAACAGCCTTGCATTTCTGCTTCC
ATTCCAGTATATAAACCCCGTGTCTGCCCCACTGTTAGGGTTGCCGCCCAACGGGCTGCTTTTGGAGCAG
CCGGGGCTGAGGCTGAGGGAACCGAGCATTTCAACTCAGAATGAGTACAATGAGAGCAGTGAATCTGAAG
TATCGCCTACACCATATAAGAGTGATCAGACGCCCAATAGAAATGCCCTGACTAGCATCACTAATGTGGA
ACCCAAAACCGAGCCAGCATGTGTCTCCCCCATTCAGAATTCTGCCCCAGTCAGTGACCTAAGCAAAACT
GAACACCCAAAAAGCTCATTCCGGATTCACCGTATGAGAAGGATGGGGTCAGCCTCCAGGAAAGGAAGGG
TATTCTGTAATGCTTGTGGGAAGACGTTCTATGACAAAGGGACTCTCAAAATTCACTATAATGCTGTTCA
CCTGAAGATTAAACACCGATGTACCATTGAAGGTTGCAACATGGTCTTTAGTTCCCTTCGAAGCCGGAAT
CGCCACAGTGCAAACCCCAACCCCCGCCTTCATATGCCTATGCTAAGGAATAACCGAGACAAAGATTTAA
TCCGGGCTACATCAGGAGCTGCCACTCCAGTCATAGCAAGTACAAAATCAAATCTCACACTCACGAGTCC
TGGCCGGCCCCCGATGGGTTTTACCACCCCTCCACTAGACCCCGTCTTACAGAACCCTCTCCCAAGCCAG
CTGGTATTTTCTGGGCTAAAGACTGTACAGCCAGTTCCTCCTTTTTATAGAAGTTTACTTACTCCAGGGG
AAATGGTGAGTCCTCCAACCTCCCTCCCAACCAGTCCCATCATTCCGACCAGTGGCACCATAGAACAGCA
CCCTCCTCCACCCTCTGAGCCAATAGTGCCGGCAGTGATGATGGGCACTCATGAGCCCAGCGCTGACCTG
GCACCTAAGAAAAAGCCTAGGAAGTCAAGCATGCCTGTAAAAATTGAGAAGGAAATCATCGACACTGCCG
ACGAGTTTGACGATGAAGACGACGATCCTAATGACGGCGGGACCGTGGTCAATGACATGAGCCATGACAA
TCACTGTCATTCCCAAGATGAGATGAGCCCAGGCATGTCCGTGAAGGACTTCTCTAAGCATAACAGGACC
CGGTGCATTTCAAGAACTGAAATAAGAAGGGCTGACAGTATGACGTCTGAGGACCAGGAGCCCGAGCGGG
ACTATGAGAACGAGTCCGAATCCTCAGAGCCTAAGCTCGGTGAGGAATCCATGGAGGGGGATGAACACCT
TCACAGTGAGGTGAGCGAGAAGGTCCTGATGAACAGCGAGAGGCCCGACGAGAACCACAGCGAGCCGTCC
CACCAGGACGTCATCAAGGTAAAGGAAGAATTTACAGACCCCACTTACGACATGTTCTACATGAGCCAGT
ACGGACTATACAACGGTGGCGGGGCCAGCATGGCTGCCCTGCATGAAAGTTTTACATCGTCTCTGAATTA
TGGAAGCCCTCAAAAGTTCTCCCCTGAAGGTGACCTGTGTTCTAGTCCAGACCCCAAAATCTGTTATGTG
TGCAAGAAGAGCTTCAAAAGCTCCTACAGTGTGAAGCTTCACTACAGGAACGTTCACTTAAAAGAGATGC
ACGTCTGCACGGTGGCTGGGTGCAATGCCGCCTTCCCCTCTCGTCGAAGCAGAGACAGACACAGTGCCAA
TATAAACCTGCATCGTAAACTGTTGACCAAAGAACTGGATGACATGAGCCTGGACTCATCGCAGCCCTCC
CTTAGCAAGGACCTCCGGGATGAATTTTTGATGAAGATCTATGGTGCCCAGCACCCTCTGGGGCTCGATG
GCAGGGAAGATGCCTCCTCTCCCGCAGGGACTGAAGACTCCCACCTGAATGGGTACGGGAGAGGCATGGC
AGAGGACTACATGGTCCTTGACCTGAGTACCACCTCCAGCCTCCAGTCCAGCAGCAGTGTCCATTCCTCC
AGAGAGTCCGATGCAGGCAGCGATGAGGGGATTCTTCTCGACGACATCGATGGCGCGAGTGACAGTGGGG
AATCCACTCACAAGGCCGAGGCCCCCACCCTCCCCGGCAGCCTCGGGGCTGAAGTTTCAGGATCTCTTAT
GTTCAGCAGTTTGTCTGGGAGCAATGGTGGGATCATGTGCAACATTTGCCACAAAATGTACAGCAACAAG
GGGACCCTGCGGGTCCACTACAAAACTGTGCATTTGCGAGAGATGCATAAGTGCAAAGTCCCCGGCTGTA
ACATGATGTTCTCCTCTGTGCGAAGCCGAAACAGGCACAGCCAGAACCCCAATCTTCACAAAAACATTCC
CTTCACTTCAATAGATTAG

Translation (1032 aa):
MARFVPSPPPNCLSYKSEGRLGEQDWQAHFKVPCCGVDPSQLEAIRCTLVNCTCECFQPGKINLRTCDQC
KHGWVAHALDKLSTQHLYHPTQVEIVQSNVVFDISSLMLYGTQAVPVRLKILLDRLFSVLKQEEVLHILH
GLGWTLRDYVRGYILQDAAGKVLDRWAIMSREEEIITLQQFLRFGETKSIVELMAIQEKEGQAVAVPSSK
TDSDIRTFIESNNRTRSPSLLAHLENSNPSSIHHFENIPNSLAFLLPFQYINPVSAPLLGLPPNGLLLEQ
PGLRLREPSISTQNEYNESSESEVSPTPYKSDQTPNRNALTSITNVEPKTEPACVSPIQNSAPVSDLSKT
EHPKSSFRIHRMRRMGSASRKGRVFCNACGKTFYDKGTLKIHYNAVHLKIKHRCTIEGCNMVFSSLRSRN
RHSANPNPRLHMPMLRNNRDKDLIRATSGAATPVIASTKSNLTLTSPGRPPMGFTTPPLDPVLQNPLPSQ
LVFSGLKTVQPVPPFYRSLLTPGEMVSPPTSLPTSPIIPTSGTIEQHPPPPSEPIVPAVMMGTHEPSADL
APKKKPRKSSMPVKIEKEIIDTADEFDDEDDDPNDGGTVVNDMSHDNHCHSQDEMSPGMSVKDFSKHNRT
RCISRTEIRRADSMTSEDQEPERDYENESESSEPKLGEESMEGDEHLHSEVSEKVLMNSERPDENHSEPS
HQDVIKVKEEFTDPTYDMFYMSQYGLYNGGGASMAALHESFTSSLNYGSPQKFSPEGDLCSSPDPKICYV
CKKSFKSSYSVKLHYRNVHLKEMHVCTVAGCNAAFPSRRSRDRHSANINLHRKLLTKELDDMSLDSSQPS
LSKDLRDEFLMKIYGAQHPLGLDGREDASSPAGTEDSHLNGYGRGMAEDYMVLDLSTTSSLQSSSSVHSS
RESDAGSDEGILLDDIDGASDSGESTHKAEAPTLPGSLGAEVSGSLMFSSLSGSNGGIMCNICHKMYSNK
GTLRVHYKTVHLREMHKCKVPGCNMMFSSVRSRNRHSQNPNLHKNIPFTSID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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