NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18413.1 Public Mus musculus 4 Dab1 23 108 98 CCDS HistoryNCBI Gene:13131Re-query CCDS DB by CCDS ID:18413.1Re-query CCDS DB by GeneID:13131See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18413.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106830.8 ENSMUSP00000102443.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106830.8Link to Ensembl Protein Viewer:ENSMUSP00000102443.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106830Re-query CCDS DB by Protein ID:ENSMUSP00000102443
Original member Current member NCBI NM_001369046.1 NP_001355975.1 Accepted alive Link to Nucleotide Sequence:NM_001369046.1Link to Protein Sequence:NP_001355975.1Re-query CCDS DB by Nucleotide ID:NM_001369046Re-query CCDS DB by Protein ID:NP_001355975Link to BLAST:NP_001355975.1
Original member Current member NCBI NM_001369047.1 NP_001355976.1 Accepted alive Link to Nucleotide Sequence:NM_001369047.1Link to Protein Sequence:NP_001355976.1Re-query CCDS DB by Nucleotide ID:NM_001369047Re-query CCDS DB by Protein ID:NP_001355976Link to BLAST:NP_001355976.1
Original member Current member NCBI NM_177259.4 NP_796233.2 Accepted alive Link to Nucleotide Sequence:NM_177259.4Link to Protein Sequence:NP_796233.2Re-query CCDS DB by Nucleotide ID:NM_177259Re-query CCDS DB by Protein ID:NP_796233Link to BLAST:NP_796233.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355975.1 555 P97318-2 555 100% 0 0
NP_001355976.1 555 P97318-2 555 100% 0 0
NP_796233.2 555 P97318-2 555 100% 0 0

Chromosomal Locations for CCDS 18413.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 104479209 104479275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104605298 104605437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104613169 104613267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104678702 104678833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104679453 104679572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104680070 104680108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104681598 104681663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104688383 104688442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104718210 104718272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104720522 104720630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104727560 104728108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104731625 104731752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104732070 104732165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGTCAACTGAGACAGAACTTCAAGTAGCTGTGAAAACCAGCGCCAAGAAAGACTCCAGGAAGAAAGGTC
AGGATCGCAGCGAAGCCACTTTGATAAAGAGGTTTAAAGGCGAAGGGGTCCGGTACAAAGCCAAGCTGAT
TGGGATTGATGAAGTGTCCGCAGCTCGGGGAGACAAGTTATGTCAAGATTCCATGATGAAGCTCAAGGGT
GTTGTTGCTGGCGCACGTTCCAAGGGAGAACACAAACAGAAAATCTTTTTAACCATCTCCTTTGGAGGAA
TCAAAATCTTTGATGAGAAGACGGGGGCCCTTCAGCATCACCATGCTGTTCATGAAATTTCCTACATTGC
GAAGGACATCACAGATCATCGGGCTTTCGGATACGTTTGCGGGAAGGAAGGGAATCACAGATTTGTGGCC
ATCAAAACAGCCCAGGCGGCTGAACCTGTTATCCTGGACTTGAGAGATCTCTTTCAACTCATCTATGAGC
TGAAGCAAAGAGAAGAATTGGAAAAAAAGGCACAAAAGGATAAGCAGTGTGAACAAGCTGTGTACCAGAC
CATTTTGGAAGAGGATGTGGAAGATCCCGTGTACCAGTACATTGTGTTTGAGGCTGGACATGAGCCAATC
CGTGATCCTGAAACAGAAGAGAACATTTACCAGGTTCCCACCAGCCAAAAGAAGGAAGGTGTTTATGATG
TGCCAAAAAGTCAACCTGTAAGTGCTGTGACCCAATTAGAACTTTTTGGAGACATGTCCACCCCTCCTGA
TATAACCTCTCCCCCTACTCCTGCAACCCCAGGTGATGCCTTTCTCCCGTCGTCGTCCCAGACGCTTCCG
GGGAGTGCAGATGTGTTTGGCTCTATGTCTTTCGGCACTGCTGCTGTACCCTCAGGTTATGTCGCTATGG
GCGCCGTCCTCCCATCCTTCTGGGGCCAGCAGCCCCTTGTTCAACAGCAGATCGCCATGGGTGCTCAGCC
ACCCGTCGCTCAGGTGATACCAGGAGCTCAGCCCATCGCATGGGGCCAGCCAGGTCTCTTTCCTGCCACC
CAGCAAGCCTGGCCCACTGTGGCCGGGCAGTTCCCGCCAGCCGCCTTCATGCCCACACAAACTGTTATGC
CTTTAGCAGCCGCCATGTTCCAAGGTCCCCTCACCCCCCTTGCAACCGTCCCAGGCACGAATGACTCTGC
CAGGTCAAGTCCACAGAGTGACAAGCCCAGGCAGAAAATGGGGAAGGAGTCGTTCAAGGATTTCCAGATG
GTCCAGCCTCCACCCGTACCCTCCCGGAAGCCTGACCAGCCCTCCCTGACCTGTACCTCAGAGGCCTTCT
CCAGTTACTTCAACAAAGTCGGGGTGGCACAGGATACAGACGACTGTGATGACTTTGACATCTCCCAACT
GAACTTGACCCCTGTGACTTCTACCACACCATCTACCAACTCACCTCCAACCCCAGCCCCTAGGCAGAGC
TCTCCATCCAAATCATCAGCATCCCACGTCAGTGACCCGACCGCAGATGACATCTTCGAAGAAGGCTTTG
AAAGTCCCAGCAAAAGTGAAGAACAAGAAGCACCTGATGGATCACAGGCCTCCTCCACCAGTGATCCATT
TGGGGAGCCCAGTGGTGAGCCCAGTGGTGATAATATAAGTCCACAAGACGGTAGCTAG

Translation (555 aa):
MSTETELQVAVKTSAKKDSRKKGQDRSEATLIKRFKGEGVRYKAKLIGIDEVSAARGDKLCQDSMMKLKG
VVAGARSKGEHKQKIFLTISFGGIKIFDEKTGALQHHHAVHEISYIAKDITDHRAFGYVCGKEGNHRFVA
IKTAQAAEPVILDLRDLFQLIYELKQREELEKKAQKDKQCEQAVYQTILEEDVEDPVYQYIVFEAGHEPI
RDPETEENIYQVPTSQKKEGVYDVPKSQPVSAVTQLELFGDMSTPPDITSPPTPATPGDAFLPSSSQTLP
GSADVFGSMSFGTAAVPSGYVAMGAVLPSFWGQQPLVQQQIAMGAQPPVAQVIPGAQPIAWGQPGLFPAT
QQAWPTVAGQFPPAAFMPTQTVMPLAAAMFQGPLTPLATVPGTNDSARSSPQSDKPRQKMGKESFKDFQM
VQPPPVPSRKPDQPSLTCTSEAFSSYFNKVGVAQDTDDCDDFDISQLNLTPVTSTTPSTNSPPTPAPRQS
SPSKSSASHVSDPTADDIFEEGFESPSKSEEQEAPDGSQASSTSDPFGEPSGEPSGDNISPQDGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH