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Report for CCDS18438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18438.1 Public Mus musculus 4 Ndc1 23 108 98 CCDS HistoryNCBI Gene:72787Re-query CCDS DB by CCDS ID:18438.1Re-query CCDS DB by GeneID:72787See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18438.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000139560.7 ENSMUSP00000120365.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000139560.7Link to Ensembl Protein Viewer:ENSMUSP00000120365.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000139560Re-query CCDS DB by Protein ID:ENSMUSP00000120365
Original member NCBI NM_028355.3 NP_082631.1 Updated not alive Link to Nucleotide Sequence:NM_028355.3Link to Protein Sequence:NP_082631.1Re-query CCDS DB by Nucleotide ID:NM_028355Re-query CCDS DB by Protein ID:NP_082631
Current member NCBI NM_028355.4 NP_082631.1 Accepted alive Link to Nucleotide Sequence:NM_028355.4Link to Protein Sequence:NP_082631.1Re-query CCDS DB by Nucleotide ID:NM_028355Re-query CCDS DB by Protein ID:NP_082631Link to BLAST:NP_082631.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082631.1 673 Q8VCB1 673 100% 0 0

Chromosomal Locations for CCDS 18438.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 107368089 107368148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107368757 107368877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107371262 107371363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107374147 107374321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107375078 107375216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107380598 107380706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107381676 107381727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107383585 107383720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107384786 107384878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107386596 107386677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107389451 107389606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107390222 107390461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107390549 107390664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107393143 107393193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107394998 107395061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107395732 107395832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107411066 107411226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107414026 107414089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2022 nt):
ATGGCCACGGCTGCGAGCGGGCCCTGCGCCGGCGGGTCGCCGCGGGACATCCTTTGGCGCGTTTTGGGTT
GGAGGATAGTTACCAGCATCGTTTGGTCAGTAGTGCTTCTACCCGTCTGCATCACAGCCTTTATAGTCTT
AAGCAGCATCAATTTATTCCACCCTATACAGTGGCTGTCAGATTCTTGCAATGACTTCTATAGTTCCCAA
GTCATCTTTCACCTCCTGCTGCTGGCCGTGGTCATTATAATAATAAGTATTTTCAATGTGGAATTCTATA
CAGTTGTGCCCTCCATATCCGGCTCCAGACTGGCCCTGATAGCGCGGATCCTGCATCCCCAGCAGCTCAC
GCACTCCTTCATCCACGCCGCGATGGGAATGGCTGTGGCTTGGTGTGCGGCCATCATGACCAAGGGCCAG
TACAGCTCTCTCGTGGTTCCCTGCACTGGAACTGAGAGCTTAGATAGCCCTGCTGCTCAGACCTGCTTGA
ATGAATATCATCTGTTTTTCCTACTGTCCGGAGCATTCATGGGCTATAGCTATAGTCTTCTGTATTTCAT
TAACAACATGAATTATCTCCCGTTTCCTATTATACAGCAGTACAAATTTTTGCGTTTCCGGAGATCTCTC
CTCTTACTAGTTAAACATAGCTGTGTGGAATCCCTGTTCATGGTCAGAAATTTCTGCATTGTGTATTATT
TTTTTGGCCATATTCCCAAAGCATGGATTAGCACTGCTCTGGACCTTCACACAGATGAGCAGGCTCACAG
GCCTCTTGACACGATAGGCGGTCTCCTGAACGTCTCATTACTCTACCACGTCTGGCTGTGTGGCGTCTTC
CTCTTGGTGACTTGGTATAGCTCATGGATACTCTTCAAAATCTATGCCACCGAGGCGCATGTGTTCCCTG
TTCAGCCGCCTTTTGCAGAAGCCTCAGATGAATGCCTTCCTAAAGTCTTAAACAGCAACCCCCCACGCAT
CGTAAAGTATTTGGCCTTACAGGACCTGATGCTGCTTTCTCAATATTCTCCTTCTCGGAGGCAAGAAGTT
TTCAGTCTCAGCCAACCAGGTGGACATCCCCACAATTGGACTGCTATTTCGAGGGAGTGTTTGAATCTTT
TAAATGATATGACTCAGAAACTGGTTCTCTACCAAGAAGCTGCTGCTACAAATGGGAGGATGTATTCATC
ATACTCAGTGGAACCCAAGAAACTGAGCTCTGCAGAAGAAACTGCTTTTCAGACTCCAAAACCTAGTCAG
ACGCCTTCCGTGCCGCCGTTAGTTAAAACTTCACTGTTTTCTCCAAAATTATCTACACCCAATGTTTCAA
GTCCTTTTGGGACCCCGTTTGGCTCCAGCGTAGTGAACCGAATGGCTGGAATTCTTGATGTAAACCCCTT
CTCTGGGTCTCCCCAAAGTCCTCAGCTCATAAGAAGAGGACCGAGGCTGTGGACTCACACTTCTGATCAA
CAAGTGTCTGCAATTTCTAACCCATCTCCTTGCGCCTCTGTTACTGCTGAGGGTAAGACAGTGAGACAGC
CCAGTGTGATCTACTCGTGGATTCAGAATAAACGAGAACAGATTAAGAATTTCTTGTCAAAACGGGTGCT
GATAATGTACTTTTTCAGTAAGCACCCAGAGGCCTCCATTCAGGCTGTTTTTTCAGATGCCCAAATGCAT
ATTTGGGCTTTAGAAGGTCTGTCTCACTTAGTAGCAGCGTCATTTACAGAAGATAGATTTGGAGTTGTCC
AGACCACACTCCCAGCTATCCTTCATACGCTGTTGACTCTGCAGGAGGCTGTCGACAAGTACTTCAAGCT
GCCTCATGCTTCTAGTAAACCACCCCGAGCTTCAGGAAGCCTTGTGGACACGTCCTACAAAACATTGAGA
TTTGCTTTCAGGGCCTCCCTGAAAACCGCTATCTACCGTATAACCACCACGTTTGGTGAACATCTGAACG
CTGTGCAGGCATCTGCAGAACATCAGAAAAGACTTCAGCAATTCTTGGAGTTCAAAGAATAG

Translation (673 aa):
MATAASGPCAGGSPRDILWRVLGWRIVTSIVWSVVLLPVCITAFIVLSSINLFHPIQWLSDSCNDFYSSQ
VIFHLLLLAVVIIIISIFNVEFYTVVPSISGSRLALIARILHPQQLTHSFIHAAMGMAVAWCAAIMTKGQ
YSSLVVPCTGTESLDSPAAQTCLNEYHLFFLLSGAFMGYSYSLLYFINNMNYLPFPIIQQYKFLRFRRSL
LLLVKHSCVESLFMVRNFCIVYYFFGHIPKAWISTALDLHTDEQAHRPLDTIGGLLNVSLLYHVWLCGVF
LLVTWYSSWILFKIYATEAHVFPVQPPFAEASDECLPKVLNSNPPRIVKYLALQDLMLLSQYSPSRRQEV
FSLSQPGGHPHNWTAISRECLNLLNDMTQKLVLYQEAAATNGRMYSSYSVEPKKLSSAEETAFQTPKPSQ
TPSVPPLVKTSLFSPKLSTPNVSSPFGTPFGSSVVNRMAGILDVNPFSGSPQSPQLIRRGPRLWTHTSDQ
QVSAISNPSPCASVTAEGKTVRQPSVIYSWIQNKREQIKNFLSKRVLIMYFFSKHPEASIQAVFSDAQMH
IWALEGLSHLVAASFTEDRFGVVQTTLPAILHTLLTLQEAVDKYFKLPHASSKPPRASGSLVDTSYKTLR
FAFRASLKTAIYRITTTFGEHLNAVQASAEHQKRLQQFLEFKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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