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Report for CCDS18453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18453.1 Public Mus musculus 4 Orc1 23 108 98 CCDS HistoryNCBI Gene:18392Re-query CCDS DB by CCDS ID:18453.1Re-query CCDS DB by GeneID:18392See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18453.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102744.3 ENSMUSP00000099805.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102744.3Link to Ensembl Protein Viewer:ENSMUSP00000099805.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102744Re-query CCDS DB by Protein ID:ENSMUSP00000099805
Original member Current member NCBI NM_011015.2 NP_035145.2 Accepted alive Link to Nucleotide Sequence:NM_011015.2Link to Protein Sequence:NP_035145.2Re-query CCDS DB by Nucleotide ID:NM_011015Re-query CCDS DB by Protein ID:NP_035145Link to BLAST:NP_035145.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035145.2 840 Q9Z1N2 840 100% 0 0

Chromosomal Locations for CCDS 18453.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 108588687 108588781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108590653 108590777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108593293 108593471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108595329 108595644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108597130 108597478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108599323 108599424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108599931 108600084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108601956 108602053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108603388 108603489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108603965 108604136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108604500 108604607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108605528 108605677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108606238 108606357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108612051 108612220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108613069 108613156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108614281 108614475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2523 nt):
ATGCCATCCTACCTCACAAGGCAGAAGACCAGACAAACTTTCTCATGGGTTGGCAGGCCATTGCCGAATC
GAAAACAGTTCCAACAAATGTACAGAGAAATTTGTATGAAAATCAATGATGGTTCTGAGATTCACATCAA
GGTTGGACAGTTTGTATTGATTCAGGGGGAAGATAATAAAAAGCCCTATGTGGCTAAACTGATTGAATTA
TTTCAAAATGGAGCTGAAGTTCCTCCCAAGAAATGTGCACGAGTACAGTGGTTTGTCAGATTCCTTGAGA
TTCCTGTCTCTAAAAGGCACTTGTTAGGCCGCAGTCCTCCTGCACAGGAGATATTCTGGTATGACTGTTC
TGACTGGGATAACAAGATTAATGTGGAGACCATCATTGGCCCTGTTCAGGTAGTGGCATTAGCCCCAGAA
GAAGTGATTCCTGTGGATCAGAAAAGTGAGGAGACACTGTTTGTGAAGCTATCCTGGAATAAAAAGGACT
TTGCACCACTGCCACCAGAAGTGCTTGCAGCATTAAGGGAACAAGAAGATAGTCCTGAGTGGCAAAAACC
TTTAAAAGCCAAGATTAAGAATGTAAAAAGCCCTGCCCGGAACACAACAGAACAAGAGGTCAAAGGGATC
AAATCAAATCATTCCACTTCCAAATTTCACCAGACTCCTGCTAATATTGTCATCCCCAATGCAAAGAAGT
CGCTGGAACTCGATGGCTTAGGTTTTACCAGGAAGCCTAACACGAGGTGGTCAAAGAAGAGCTCGTGTGA
CTCCTTGGATTATCAAAAAACATCTAAAAGAAGAGCAGCCTTCTCTGAGACCACCTCGCCTCCTAAAAAG
CCTAATAAACCTCGTGAAATCAAGCCCTCTTCAGCTTTGGAAACTCGAGTTAAAAATGGACAAACTCAAC
CTTTTTGTGCCAAAAGTAGTGTGGTTCTGAGAGCCCGGAACCCAGCTATGACGACCACAAAGCTTGGTGT
GGACAACACACTTAGCCCTATCAGGAATGGGTTGAGATCTTCAGTGGTGCCCTCTGGGGGTCTGACACCA
GTATACATTAGGAGGAAGGCAAAAGAACAAGAAACTCACAAAGAACCCATCCGTACTTCTCGTGTCCATA
GAAAGAGTTCTCTCTTGACTTTGAAGCGGATTAGGCAACAGCTTTGTCTTCTAGATGGTGATGACAGGGA
CCAAGAAGAGGAAGAGTCCGTAGACTCTGAGAGTGAGGAGGAAGATGAGTTTATTTCCTCCCTCCCAACA
AGAAATTCCCTGGGGCAGTCCAGGACCCGGCAGACCCCCTCCAAGTCACCACAGAAAAATCCTAAACCTA
GAACACCTCATCGTGCCACTCCTCAGATCCGAGACAGAAACCTGGCTGTCCAGGAGCCAGCTAGTGCGCT
GGAAGAGGCACGGCTGAGGTTGCATGTTTCTGCTGTGCCTGACTCTCTCCCCTGTCGAGAGCAGGAATTC
CAAGACATCTACAGCTTTGTGGAAAGTAAACTTCTTGATGGGACTGGAGGGTGTATGTACATTTCTGGGG
TCCCTGGGACAGGGAAGACAGCCACTGTGCATGAGGTCATACGCTGTCTGCAGCAGGCAGCAGAAACAGA
TGATGTTCCTCCCTTTCAATATGTTGAGGTTAATGGGATGAAGCTGACAGAACCCCACCAAGTCTATGTG
CAGATTTTAAAGAAACTGACAGGCCAGAAGGCAACAGCCAATCATGCAGCAGAACTGCTGGCGAAGCAAT
TCTGTGGCCAAGGGTCCCAGAAGGAAACCACTGTACTGCTCGTGGATGAGCTTGACCTTCTTTGGACTCA
CAAACAAGATGTAATGTACAACCTCTTTGATTGGCCTACTCACAAAGGGGCCCACTTGATAGTGCTGACC
ATTGCCAACACCATGGACCTTCCCGAGAGGATCATGATGAACCGTGTGTCTAGCCGACTGGGCCTCACCA
GGATGTCTTTCCAGCCCTATTCTCACAGCCAGCTGAAACAGATCTTAGTGTCTCGACTGAGGAATTTAAG
GGCCTTTGAGGACGATGCCATCCAGCTGGTGGCCAGGAAGGTAGCAGCCCTCTCTGGAGATGCCCGGCGC
TGCCTGGACATCTGCAGGCGTGCCACGGAGATCTGCGAGCTTTCCCATCTACGCGGTGACTCTCTGAGCC
TGGTGACTGTGGCCCACTTAATGGAAGCTATAGATGAAATGTTCTCCTCGTCATATATTACTGCCATCAA
AAACTCTTCTGTCGTGGAACAGAGCTTCCTGAGAGCCATTATTGCGGAATTCCGTCGGTCAGGACTAGAG
GAAGCAACCTTTCAACAGATATACAGTCAGCACGTGGCTCTGTGCCGAATGGAGGGACTGCCATACCCAA
CCATGTCAGAGACCATGGCTGTGTGCTCACGTCTGGGTTCTTGCCGCCTCCTTCTGGTGGAGCCCAGTAG
AAATGACCTCCTCCTTCGAGTGAGACTCAATGTTAGCCAGAATGACGTGCTGTTTGCTCTCAAAGAAGAG
TGA

Translation (840 aa):
MPSYLTRQKTRQTFSWVGRPLPNRKQFQQMYREICMKINDGSEIHIKVGQFVLIQGEDNKKPYVAKLIEL
FQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGRSPPAQEIFWYDCSDWDNKINVETIIGPVQVVALAPE
EVIPVDQKSEETLFVKLSWNKKDFAPLPPEVLAALREQEDSPEWQKPLKAKIKNVKSPARNTTEQEVKGI
KSNHSTSKFHQTPANIVIPNAKKSLELDGLGFTRKPNTRWSKKSSCDSLDYQKTSKRRAAFSETTSPPKK
PNKPREIKPSSALETRVKNGQTQPFCAKSSVVLRARNPAMTTTKLGVDNTLSPIRNGLRSSVVPSGGLTP
VYIRRKAKEQETHKEPIRTSRVHRKSSLLTLKRIRQQLCLLDGDDRDQEEEESVDSESEEEDEFISSLPT
RNSLGQSRTRQTPSKSPQKNPKPRTPHRATPQIRDRNLAVQEPASALEEARLRLHVSAVPDSLPCREQEF
QDIYSFVESKLLDGTGGCMYISGVPGTGKTATVHEVIRCLQQAAETDDVPPFQYVEVNGMKLTEPHQVYV
QILKKLTGQKATANHAAELLAKQFCGQGSQKETTVLLVDELDLLWTHKQDVMYNLFDWPTHKGAHLIVLT
IANTMDLPERIMMNRVSSRLGLTRMSFQPYSHSQLKQILVSRLRNLRAFEDDAIQLVARKVAALSGDARR
CLDICRRATEICELSHLRGDSLSLVTVAHLMEAIDEMFSSSYITAIKNSSVVEQSFLRAIIAEFRRSGLE
EATFQQIYSQHVALCRMEGLPYPTMSETMAVCSRLGSCRLLLVEPSRNDLLLRVRLNVSQNDVLFALKEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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