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Report for CCDS18606.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18606.1 Public Mus musculus 4 Mycl 23 108 98 CCDS HistoryNCBI Gene:16918Re-query CCDS DB by CCDS ID:18606.1Re-query CCDS DB by GeneID:16918See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18606.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030407.7 ENSMUSP00000030407.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030407.7Link to Ensembl Protein Viewer:ENSMUSP00000030407.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030407Re-query CCDS DB by Protein ID:ENSMUSP00000030407
Original member Current member EBI ENSMUST00000106252.8 ENSMUSP00000101859.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106252.8Link to Ensembl Protein Viewer:ENSMUSP00000101859.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106252Re-query CCDS DB by Protein ID:ENSMUSP00000101859
Original member NCBI NM_008506.3 NP_032532.1 Updated not alive Link to Nucleotide Sequence:NM_008506.3Link to Protein Sequence:NP_032532.1Re-query CCDS DB by Nucleotide ID:NM_008506Re-query CCDS DB by Protein ID:NP_032532
Current member NCBI NM_008506.4 NP_032532.1 Accepted alive Link to Nucleotide Sequence:NM_008506.4Link to Protein Sequence:NP_032532.1Re-query CCDS DB by Nucleotide ID:NM_008506Re-query CCDS DB by Protein ID:NP_032532Link to BLAST:NP_032532.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032532.1 368 P10166 368 100% 0 0

Chromosomal Locations for CCDS 18606.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 122996523 122997018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 122999905 123000515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGGACTTCGACTCGTATCAGCACTATTTCTACGACTATGACTGCGGAGAGGATTTCTACCGCTCCACGG
CGCCCAGCGAGGACATCTGGAAGAAATTCGAGCTGGTGCCGTCGCCCCCCACGTCGCCGCCCTGGGGCTC
CGGTCCCGGCGCCGTGGACCCAGCCTCTGGGATTAATCCCGGGGAGCCGTGGCCTGGAGGGGGTGCCGGG
GACGAGGCGGAATCTCGGGGCCATTCGAAAGCCTGGGGCAGGAATTATGCTTCCATCATTCGCCGTGACT
GCATGTGGAGCGGCTTCTCCGCCCGAGAACGGCTGGAGAGAGTGGTGAGCGACAGGCTGGCCCCAGGCGC
GCCCCGGGGGAACCCGCCCAAAGCGCCCGCTACCCCGGACGGCACTCCTAGTCTGGAAGCCAGTAACCCG
GCGCCCGCCACCCAATGTCAGCTGGGCGAGCCCAAGACTCAGGCCTGCTCCGGGTCCGAGAGCCCCAGCG
ATTCTGAAGGTGAAGAGATTGACGTGGTGACCGTGGAGAAGAGGCGATCTCTGGACATCCGAAAGCCAGT
CACCATCACGGTGCGAGCAGACCCCCTGGACCCCTGCATGAAGCACTTCCATATCTCTATCCACCAACAG
CAGCATAACTATGCTGCCCGTTTTCCTCCAGAAAGTTGCTCTCAAGAGGGGGATCCTGAGCCAGGTCCCC
AGGAAGAGGCTCCGGAGATAGAAGCTCCCAAGGAGAAAGAGGAGGAGGAAGAGGAAGAGGAGGAAGAAGA
GATTGTGAGCCCCCCACCTGTCGGAAGTGAGGCTCCCCAGTCCTGCCACCCCAAACCTGTCAGTTCTGAC
ACTGAGGACGTGACCAAGAGGAAGAACCATAACTTCTTGGAACGAAAAAGGAGGAATGACCTCCGCTCCC
GGTTCCTAGCCCTGCGGGACCAGGTTCCCACCCTGGCCAGCTGCTCTAAGGCCCCCAAAGTCGTGATCCT
CAGCAAGGCGTTAGAATACTTGCAGGCTTTGGTGGGGGCTGAAAAGAAAATGGCTACAGAGAAAAGGCAG
CTCCGGTGTCGGCAACAGCAACTGCAAAAGAGAATCGCGTACCTCAGTGGCTACTAA

Translation (368 aa):
MDFDSYQHYFYDYDCGEDFYRSTAPSEDIWKKFELVPSPPTSPPWGSGPGAVDPASGINPGEPWPGGGAG
DEAESRGHSKAWGRNYASIIRRDCMWSGFSARERLERVVSDRLAPGAPRGNPPKAPATPDGTPSLEASNP
APATQCQLGEPKTQACSGSESPSDSEGEEIDVVTVEKRRSLDIRKPVTITVRADPLDPCMKHFHISIHQQ
QHNYAARFPPESCSQEGDPEPGPQEEAPEIEAPKEKEEEEEEEEEEEIVSPPPVGSEAPQSCHPKPVSSD
TEDVTKRKNHNFLERKRRNDLRSRFLALRDQVPTLASCSKAPKVVILSKALEYLQALVGAEKKMATEKRQ
LRCRQQQLQKRIAYLSGY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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