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Report for CCDS18760.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18760.1 Public Mus musculus 4 Dhdds 23 108 98 CCDS HistoryNCBI Gene:67422Re-query CCDS DB by CCDS ID:18760.1Re-query CCDS DB by GeneID:67422See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18760.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000012262.11 ENSMUSP00000012262.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000012262.11Link to Ensembl Protein Viewer:ENSMUSP00000012262.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000012262Re-query CCDS DB by Protein ID:ENSMUSP00000012262
Original member Current member EBI ENSMUST00000144668.7 ENSMUSP00000116098.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000144668.7Link to Ensembl Protein Viewer:ENSMUSP00000116098.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000144668Re-query CCDS DB by Protein ID:ENSMUSP00000116098
Original member Current member NCBI NM_001362959.1 NP_001349888.1 Accepted alive Link to Nucleotide Sequence:NM_001362959.1Link to Protein Sequence:NP_001349888.1Re-query CCDS DB by Nucleotide ID:NM_001362959Re-query CCDS DB by Protein ID:NP_001349888Link to BLAST:NP_001349888.1
Original member Current member NCBI NM_001362962.1 NP_001349891.1 Accepted alive Link to Nucleotide Sequence:NM_001362962.1Link to Protein Sequence:NP_001349891.1Re-query CCDS DB by Nucleotide ID:NM_001362962Re-query CCDS DB by Protein ID:NP_001349891Link to BLAST:NP_001349891.1
Original member Current member NCBI NM_026144.5 NP_080420.2 Accepted alive Link to Nucleotide Sequence:NM_026144.5Link to Protein Sequence:NP_080420.2Re-query CCDS DB by Nucleotide ID:NM_026144Re-query CCDS DB by Protein ID:NP_080420Link to BLAST:NP_080420.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349888.1 333 Q99KU1-1 333 100% 0 0
NP_001349891.1 333 Q99KU1-1 333 100% 0 0
NP_080420.2 333 Q99KU1-1 333 100% 0 0

Chromosomal Locations for CCDS 18760.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 133971017 133971253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133980124 133980231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133982800 133982914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133991279 133991380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133992464 133992580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133994162 133994304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133996822 133996938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134000269 134000331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGTCATGGATCAAAGAAGGAGAGCTGTCACTGTGGGAACGGTTCTGTGCTAACATCATAAAGGCTGGCC
CAGTACCCAAACATATCGCGTTCATAATGGACGGCAACCGTCGCTATGCCAAGAAGTGTCAGGTGGAGCG
CCAGGAGGGCCACACACAGGGCTTCAATAAGCTTGCTGAGACTCTCCGCTGGTGTTTGAACCTGGGCATC
CTAGAAGTGACTGTCTACGCATTCAGCATTGAGAACTTCAAACGTTCCAAGAGTGAGGTTGACGGACTCC
TGGATCTAGCCAGACAGAAGTTCAGCTGCTTGATGGAAGAACAGGAGAAGCTGCAGAAGCACGGGGTGTG
CATCCGCGTCCTGGGTGATCTGCATCTGCTGCCCTTGGACCTCCAGGAGAAGATTGCGCATGCCATCCAG
GCTACTAAGAACTACAATAAGTGTTTCCTCAATGTCTGCTTTGCATACACATCACGTCATGAGATTGCCA
ATGCTGTGAGAGAGATGGCCTGGGGCGTGGAACAAGGTCTGCTGGAACCCAGTGATGTCTCCGAGTCTCT
GCTCGATAAGTGCCTCTATAGCAACCACTCTCCTCATCCCGACATCCTGATCCGGACTTCTGGGGAGGTG
CGGCTGAGTGACTTCTTGCTCTGGCAGACGTCCCATTCCTGCCTCGTGTTCCAGCCTGTCCTGTGGCCAG
AATACACATTTTGGAACCTGTGTGAGGCAATTCTGCAGTTTCAGAGGAACCATGGTGCACTTCAGAAGGC
CCGAGACATGTACGCTGAGGAGCGGAAGAGGCGCCAGCTGGAGAGGGACCAGGCCGCAGTGACAGAGCAG
CTGCTTCGAGAGGGGCTCCAGGCCAGTGGGGATGCCCAACTCCGACGGACACGCTTGCACAAACTCTCCA
CCAAACGGGAAGAGCGAGTCCAAGGCTTCCTGAAGGCCTTGGAACTTAAACGGGCCAACTGGCTGGCACT
TTGGGGCACTGCATCTGCCTAA

Translation (333 aa):
MSWIKEGELSLWERFCANIIKAGPVPKHIAFIMDGNRRYAKKCQVERQEGHTQGFNKLAETLRWCLNLGI
LEVTVYAFSIENFKRSKSEVDGLLDLARQKFSCLMEEQEKLQKHGVCIRVLGDLHLLPLDLQEKIAHAIQ
ATKNYNKCFLNVCFAYTSRHEIANAVREMAWGVEQGLLEPSDVSESLLDKCLYSNHSPHPDILIRTSGEV
RLSDFLLWQTSHSCLVFQPVLWPEYTFWNLCEAILQFQRNHGALQKARDMYAEERKRRQLERDQAAVTEQ
LLREGLQASGDAQLRRTRLHKLSTKREERVQGFLKALELKRANWLALWGTASA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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