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Report for CCDS18777.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18777.1 Public Mus musculus 4 Maco1 23 108 98 CCDS HistoryNCBI Gene:66146Re-query CCDS DB by CCDS ID:18777.1Re-query CCDS DB by GeneID:66146See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18777.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030628.14 ENSMUSP00000030628.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030628.14Link to Ensembl Protein Viewer:ENSMUSP00000030628.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030628Re-query CCDS DB by Protein ID:ENSMUSP00000030628
Original member Current member NCBI NM_025382.6 NP_079658.2 Accepted alive Link to Nucleotide Sequence:NM_025382.6Link to Protein Sequence:NP_079658.2Re-query CCDS DB by Nucleotide ID:NM_025382Re-query CCDS DB by Protein ID:NP_079658Link to BLAST:NP_079658.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079658.2 664 Q7TQE6 664 100% 0 0

Chromosomal Locations for CCDS 18777.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 134804362 134804564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134806517 134806691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134809600 134809720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134811136 134811318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134812540 134812698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134828007 134828508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134830549 134830727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134833198 134833321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134836323 134836449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134837849 134837990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134853038 134853117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1995 nt):
ATGAAGCGGCGGAACGCCGACTGCAGTAAGCTCCGCCGCCCCCTGAAGCGGAACCGGATCACCGAGGGTA
TCTACGGCAGTACATTTTTATACCTGAAATTCCTGGTAGTGTGGGCACTTGTCCTCCTTGCCGACTTTGT
CCTGGAGTTCCGATTTGAATACCTGTGGCCGTTCTGGCTTTTCATCAGAAGCGTCTATGATTCCTTCAGA
TACCAAGGACTGGCCTTCTCAGTATTTTTTGTTTGTGTAGCATTCACTTCAAATATCATATGTCTCCTCT
TCATTCCCATACAATGGCTTTTTTTCGCTGCTAGCACATATGTATGGGTCCAGTACGTATGGCACACAGA
AAGGGGAGTGTGTTTGCCTACAGTGTCACTCTGGATCCTCTTTGTTTATATTGAAGCAGCAATTAGATTT
AAAGATCTGAAAAACTTTCATGTAGACCTTTGTCGACCGTTTGCTGCTCACTGCATTGGATACCCTGTGG
TGACTTTGGGCTTTGGCTTCAAAAGTTATGTGAGCTACAAAATGCGGTTAAGGAAGCAGAAGGAAGTTCA
GAAGGAGAACGAGTTTTACATGCAGCTTCTTCAGCAGGCCCTCCCTCCAGAGCAGCAAATGTTGCAGAAG
CAGGAGAAGGAGGCTGAGGAAGCAGCCAAGGGATTGCCGGACATGGATTCCTCGATCCTTATACACCACA
ACGGAGGCATCCCAGCCAACAAAAAACTGTCCACAACGTTGCCAGAGATAGAATATCGAGAAAAAGGGAA
AGAGAAGGACAAGGATGCCAAGAAACACAACCTTGGAATAAATAACAACAACATTCTACAACCTGTAGAC
TCTAAGATACAAGAGATTGAGTATATGGAAAACCATATCAATAGTAAAAGATTAAACAATGATCTTGTGG
GAAGTACAGAAAATCTCTTAAAAGAGGACTCATGCACTGCTTCCTCAAAAAATTACAAAAATGCCAGTGG
AGTTGTGAACTCCTCGCCTCGAAGTCACAGCGCTACAAATGGAAGCATTCCTTCCTCGTCTAGTAAAAAC
GAGAAGAAGCAGAAGTGCACCAGCAAGGGCCCGAGTGCACACAAGGACTTAATGGAGAACTGTATTCCTA
ACAACCAGCTGAGCAAACCAGACGCGCTGGTAAGGCTGGAACAAGACATTAAAAAGCTAAAGGCTGACCT
GCAAGCCAGCCGGCAAGTGGAGCAAGAGCTGCGCAGTCAGATCAGCGCCCTCTCAAGCACAGAGCGAGGC
ATCCGCTCAGAAATGGGCCAGCTCCGGCAGGAGAACGAGCTGCTGCAGAACAAGTTACACAATGCCGTGC
AAATGAAGCAAAAAGACAAGCAGAATATCAGCCAGCTAGAGAAGAAGCTAAAGGCTGAGCAGGAAGCCCG
AAGCTTTGTAGAAAAGCAGCTAATGGAGGAGAAAAAAAGGAAGAAGTTAGAAGAAGCCACAGCTGCACGG
GCTGTTGCCTTTGCTGCTGCATCTAGGGGAGAGTGCACGGAAACCTTACGGAGTCGGATCAGAGAGCTAG
AAGCTGAGGGCAAGAAGCTCACAATGGACATGAAAGTGAAGGAGGAGCAGATCAGGGAACTGGAACTGAA
GGTTCAGGAGCTTCGGAAGTACAAAGAAAACGAGAAGGACACCGAGGTATTGATGTCAGCCCTCTCCGCC
ATGCAAGACAAAACGCAACACCTAGAGAACAGTCTCAGCGCAGAGACGAGGATCAAGCTGGACCTCTTCT
CTGCACTTGGTGATGCAAAGCGGCAGCTGGAGATTGCCCAGGGGCAAATTCTTCAGAAAGACCAGGAAAT
CAAGGACCTAAAACAGAAAATAGCTGAAGTCATGGCTGTCATGCCCAGCATAACATACAGTGCTGCCACC
AGTCCCCTGAGCCCCGTGTCCCCCCACTACTCTTCCAAGTTTGTGGAGACCAGCCCCTCTGGACTTGACC
CTAATGCCTCTGTCTACCAGCCCTTGAAGAAGTGA

Translation (664 aa):
MKRRNADCSKLRRPLKRNRITEGIYGSTFLYLKFLVVWALVLLADFVLEFRFEYLWPFWLFIRSVYDSFR
YQGLAFSVFFVCVAFTSNIICLLFIPIQWLFFAASTYVWVQYVWHTERGVCLPTVSLWILFVYIEAAIRF
KDLKNFHVDLCRPFAAHCIGYPVVTLGFGFKSYVSYKMRLRKQKEVQKENEFYMQLLQQALPPEQQMLQK
QEKEAEEAAKGLPDMDSSILIHHNGGIPANKKLSTTLPEIEYREKGKEKDKDAKKHNLGINNNNILQPVD
SKIQEIEYMENHINSKRLNNDLVGSTENLLKEDSCTASSKNYKNASGVVNSSPRSHSATNGSIPSSSSKN
EKKQKCTSKGPSAHKDLMENCIPNNQLSKPDALVRLEQDIKKLKADLQASRQVEQELRSQISALSSTERG
IRSEMGQLRQENELLQNKLHNAVQMKQKDKQNISQLEKKLKAEQEARSFVEKQLMEEKKRKKLEEATAAR
AVAFAAASRGECTETLRSRIRELEAEGKKLTMDMKVKEEQIRELELKVQELRKYKENEKDTEVLMSALSA
MQDKTQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQILQKDQEIKDLKQKIAEVMAVMPSITYSAAT
SPLSPVSPHYSSKFVETSPSGLDPNASVYQPLKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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