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Report for CCDS18783.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18783.1 Public Mus musculus 4 Clic4 23 108 98 CCDS HistoryNCBI Gene:29876Re-query CCDS DB by CCDS ID:18783.1Re-query CCDS DB by GeneID:29876See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18783.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037099.8 ENSMUSP00000041453.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037099.8Link to Ensembl Protein Viewer:ENSMUSP00000041453.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000037099Re-query CCDS DB by Protein ID:ENSMUSP00000041453
Original member Current member NCBI NM_013885.2 NP_038913.1 Accepted alive Link to Nucleotide Sequence:NM_013885.2Link to Protein Sequence:NP_038913.1Re-query CCDS DB by Nucleotide ID:NM_013885Re-query CCDS DB by Protein ID:NP_038913Link to BLAST:NP_038913.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038913.1 253 Q9QYB1 253 100% 0 0

Chromosomal Locations for CCDS 18783.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 135217101 135217265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135218508 135218689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135223464 135223570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135226024 135226149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135238862 135238971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135272518 135272589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGGCGCTGTCGATGCCCCTGAACGGGCTGAAGGAGGAGGACAAAGAGCCCCTCATCGAGCTCTTCGTCA
AGGCCGGAAGTGATGGTGAAAGCATTGGAAACTGCCCCTTTTCACAGAGGCTCTTCATGATCCTTTGGCT
CAAAGGAGTCGTGTTCAGTGTCACAACCGTTGACCTGAAAAGGAAACCTGCAGATCTACAGAACTTGGCT
CCTGGGACCCACCCGCCATTTATAACCTTCAACAGCGAAGTCAAGACGGATGTGAATAAGATTGAGGAAT
TTCTCGAAGAAGTCTTGTGCCCACCCAAGTACCTAAAGCTTTCACCAAAGCACCCAGAGTCGAACACTGC
TGGAATGGACATCTTTGCCAAATTCTCTGCTTACATCAAGAACTCAAGACCAGAGGCTAATGAAGCGCTG
GAGAGGGGGCTCTTGAAAACGCTGCAGAAACTGGATGAGTACCTCAACTCTCCCCTCCCCGACGAAATCG
ACGAGAACAGCATGGAGGACATCAAATTTTCCACACGTCGGTTTCTGGACGGCGATGAGATGACATTAGC
AGACTGTAACCTGCTGCCCAAGCTCCACATTGTCAAGGTGGTGGCCAAAAAATACCGCAACTTTGATATT
CCTAAAGGAATGACAGGCATCTGGAGGTACCTGACAAACGCCTACAGCAGGGACGAGTTCACCAACACCT
GTCCCAGCGACAAGGAGGTGGAAATCGCGTACAGCGATGTCGCCAAGAGACTTACCAAGTAG

Translation (253 aa):
MALSMPLNGLKEEDKEPLIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLA
PGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEAL
ERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRRFLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDI
PKGMTGIWRYLTNAYSRDEFTNTCPSDKEVEIAYSDVAKRLTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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