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Report for CCDS18786.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18786.1 Public Mus musculus 4 Nipal3 23 108 98 CCDS HistoryNCBI Gene:74552Re-query CCDS DB by CCDS ID:18786.1Re-query CCDS DB by GeneID:74552See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18786.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102549.9 ENSMUSP00000099608.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102549.9Link to Ensembl Protein Viewer:ENSMUSP00000099608.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102549Re-query CCDS DB by Protein ID:ENSMUSP00000099608
Original member Current member NCBI NM_001361484.1 NP_001348413.1 Accepted alive Link to Nucleotide Sequence:NM_001361484.1Link to Protein Sequence:NP_001348413.1Re-query CCDS DB by Nucleotide ID:NM_001361484Re-query CCDS DB by Protein ID:NP_001348413Link to BLAST:NP_001348413.1
Original member Current member NCBI NM_028995.4 NP_083271.1 Accepted alive Link to Nucleotide Sequence:NM_028995.4Link to Protein Sequence:NP_083271.1Re-query CCDS DB by Nucleotide ID:NM_028995Re-query CCDS DB by Protein ID:NP_083271Link to BLAST:NP_083271.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348413.1 410 Q8BGN5 410 100% 0 0
NP_083271.1 410 Q8BGN5 410 100% 0 0

Chromosomal Locations for CCDS 18786.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 135452373 135452572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135463786 135463880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135465688 135465751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135466847 135466935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135468506 135468641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135471885 135471981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135474324 135474469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135477433 135477492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135479536 135479707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135482472 135482540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135490933 135491037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1233 nt):
ATGGACGGAGCCCACAGTGCAGGTCTGCAGCTGCAGCCACTCCCACCCACCAGCGGCGCCACCTCCACGA
GCCTGAGCAGCAGCGAGGGCTCCTTCTCCTACAAGGAAAACTTGATCGGAGCACTCTTGGCCATTTTTGG
GCACCTGGTGGTCAGCATTGCCCTTAACCTGCAGAAATACTGCCACATCCGCCTAGCAGGCTCCAAGGAC
CCACGGGCCTACTTCAAGACCAAGACATGGTGGCTGGGGCTGCTCCTGCTGCTACTGGGGGAACTGGGCG
TGTTCGCCTCCTACGCCTTTGCTCCACTGTCGCTCATCGTGCCCCTCAGTGCCGTCTCCGTGATAGCAAG
CGCCATCATCGGAATCATATTCATCAAGGAAAAATGGAAACCTAAGGACTTTGTGAGACGCTATGTCTTG
TCCTTTGTTGGCTGCGGCTTGGCCATCGTGGGCACCTACCTGCTAGTGACATTTGCACCCAACAGTCATG
AGAAGATGACAGGCGAGAACATCGCCAGGCACCTTGTGAGCTGGCCGTTTCTCCTGTACATGCTGGTGGC
GATCGTCCTGTTCTGCCTGCTGCTCTACTTCTACAAGGAGAGGAACGCCAACAGCATCGTTGTGATTCTC
CTCCTGGTGGCCCTGCTTGGTTCCATGACAGTGGTGACGGTCAAGGCCGTGTCAGGGATGCTGGTGCTGT
CCATCCAAGGCAACCTGCAGCTGGACTACCCCATCTTCTACGTGATGTTTGTGTGCATGGTGGCCACCGC
CATCTATCAGGCCACGTTTCTGAGTGAAGCCTCCCAGATCTATGACTCCTCCTTGATTGCCAGCGTTGGC
TACATCCTGTCCACAACAGCGGCCATCACAGCAGGTGCGATCTTCTACCTGGACTTCCTTGGGGAGGAAG
CTCTGCACATCTGTATGTTTGCACTGGGGTGCCTCATCGCCTTCTTGGGCGTGTTCCTAATCACTCGAAA
CAGAAAGAAGGCCATTCCGTTCGAGCCCTATATTTCCATGGACGCCATGCCAGGTATGCAGGACATGCAT
GCCAAAGGGACAACGGTCCAGCCTGACCTCAAAGCTTCTTTTTCCTACGGAGCCTTGGAAAGCAACGACA
GCATTTCTGAGCTCTACACCCCGGCCACACTGCCCGTCATGCAGGAGGAGCACAGCTCCAGGAGCACCCC
TGGGGTTCCCTACCGCGTCCTGGAGCACACCAAGAAGGAATGA

Translation (410 aa):
MDGAHSAGLQLQPLPPTSGATSTSLSSSEGSFSYKENLIGALLAIFGHLVVSIALNLQKYCHIRLAGSKD
PRAYFKTKTWWLGLLLLLLGELGVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFVRRYVL
SFVGCGLAIVGTYLLVTFAPNSHEKMTGENIARHLVSWPFLLYMLVAIVLFCLLLYFYKERNANSIVVIL
LLVALLGSMTVVTVKAVSGMLVLSIQGNLQLDYPIFYVMFVCMVATAIYQATFLSEASQIYDSSLIASVG
YILSTTAAITAGAIFYLDFLGEEALHICMFALGCLIAFLGVFLITRNRKKAIPFEPYISMDAMPGMQDMH
AKGTTVQPDLKASFSYGALESNDSISELYTPATLPVMQEEHSSRSTPGVPYRVLEHTKKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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