NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1880.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1880.2 Public Homo sapiens 2 CEP68 24 110 108 CCDS HistoryNCBI Gene:23177Re-query CCDS DB by CCDS ID:1880.2Re-query CCDS DB by GeneID:23177See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1880.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377990.7 ENSP00000367229.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377990.7Link to Ensembl Protein Viewer:ENSP00000367229.2Re-query CCDS DB by Nucleotide ID:ENST00000377990Re-query CCDS DB by Protein ID:ENSP00000367229
Original member Current member NCBI NM_001319100.2 NP_001306029.1 Accepted alive Link to Nucleotide Sequence:NM_001319100.2Link to Protein Sequence:NP_001306029.1Re-query CCDS DB by Nucleotide ID:NM_001319100Re-query CCDS DB by Protein ID:NP_001306029Link to BLAST:NP_001306029.1
Original member Current member NCBI NM_015147.3 NP_055962.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015147.3Link to Protein Sequence:NP_055962.2Re-query CCDS DB by Nucleotide ID:NM_015147Re-query CCDS DB by Protein ID:NP_055962Link to BLAST:NP_055962.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001306029.1 757 Q76N32-1 757 100% 0 0
NP_055962.2 757 Q76N32-1 757 100% 0 0

Chromosomal Locations for CCDS 1880.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 65069445 65069801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65071454 65072980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65074282 65074404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65077868 65077964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65082536 65082705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2274 nt):
ATGGCCCTGGGTGAAGAAAAGGCAGAAGCGGAAGCATCTGAAGACACAAAGGCCCAGTCCTATGGGAGAG
GGAGCTGCAGGGAGCGGGAGCTGGACATCCCAGGGCCCATGAGTGGGGAGCAGCCCCCACGCCTGGAAGC
TGAGGGAGGGCTCATCTCCCCTGTATGGGGGGCAGAAGGGATACCTGCCCCTACTTGCTGGATTGGGACT
GACCCTGGCGGCCCCTCTAGAGCCCACCAGCCACAGGCCAGTGATGCCAACAGAGAGCCCGTAGCTGAGA
GGTCTGAGCCTGCACTCAGTGGCCTGCCTCCTGCCACCATGGGGTCTGGAGACCTTCTGCTCTCCGGGGA
AAGCCAGGTGGAGAAGACCAAGCTTTCTTCCTCCGAGGAGTTCCCTCAGACTCTGAGCCTTCCCAGAACA
ACAACTATTTGCTCAGGACATGATGCTGATACCGAAGATGATCCATCCCTAGCAGATTTGCCCCAGGCAC
TGGACCTCAGCCAGCAGCCTCACAGCTCAGGTCTCTCTTGCCTGTCACAGTGGAAGTCCGTGCTGAGCCC
AGGTTCCGCAGCTCAGCCTTCCAGCTGCAGCATCTCTGCTTCCTCCACAGGCAGCAGTCTCCAGGGTCAC
CAGGAGAGGGCGGAGCCTCGTGGTGGTTCTCTGGCCAAGGTCTCCTCCTCCCTGGAGCCGGTCGTCCCCC
AGGAACCTTCCTCTGTGGTGGGGCTAGGACCTCGGCCCCAGTGGTCACCACAGCCTGTGTTCTCTGGGGG
TGATGCTTCTGGGCTAGGCAGGAGACGCCTCTCCTTCCAGGCTGAGTACTGGGCCTGTGTGCTGCCAGAT
TCCCTGCCTCCATCACCCGACCGCCACTCCCCTCTCTGGAACCCAAATAAAGAGTATGAAGATCTGCTTG
ACTATACTTACCCACTGAGGCCCGGGCCTCAGCTCCCAAAGCACCTTGATAGCCGTGTGCCAGCTGACCC
TGTCCTGCAGGACTCCGGGGTAGACCTGGATAGCTTCTCTGTCTCTCCAGCAAGCACCCTCAAATCACCT
ACTAATGTCTCCCCCAACTGCCCACCAGCAGAGGCCACTGCCCTGCCATTTTCTGGGCCCAGAGAGCCAA
GCCTTAAGCAGTGGCCCTCCAGAGTACCCCAGAAACAGGGTGGCATGGGCTTGGCATCTTGGAGCCAACT
TGCATCTACCCCCAGAGCCCCAGGCAGTAGGGATGCTCGTTGGGAGCGCAGAGAGCCAGCCCTGAGGGGT
GCGAAGGACCGGCTGACTATAGGCAAGCACCTTGATATGGGCTCTCCCCAGCTAAGGACACGGGACAGAG
GGTGGCCCTCGCCCAGGCCAGAGAGGGAGAAGAGGACCAGCCAGAGTGCCCGGCGCCCTACCTGCACAGA
GTCTAGGTGGAAATCAGAAGAGGAAGTGGAAAGTGATGACGAGTATCTTGCCCTCCCCGCTCGGCTGACA
CAGGTTTCTAGCCTGGTTTCGTATCTAGGATCCATTTCTACCTTGGTTACCCTGCCCACTGGGGATATCA
AAGGGCAGAGCCCCTTGGAAGTGTCAGACAGTGATGGGCCAGCTTCCTTCCCTTCAAGCTCCAGCCAAAG
CCAGCTTCCCCCTGGAGCTGCCCTCCAAGGATCTGGGGATCCTGAGGGCCAGAATCCCTGTTTCCTGCGC
TCCTTCGTCCGTGCCCACGACTCCGCAGGGGAAGGCAGTCTGGGGAGCAGCCAGGCCCTCGGGGTCTCCT
CTGGACTGCTGAAAACACGCCCCTCCTTGCCAGCTAGGTTGGACCGGTGGCCATTCTCAGACCCAGATGT
TGAAGGGCAGCTTCCCAGGAAAGGAGGAGAACAGGGAAAAGAATCACTGGTGCAATGTGTGAAGACATTT
TGCTGTCAGCTGGAAGAGCTGATCTGCTGGCTGTATAATGTTGCAGATGTTACTGACCACGGGACTGCAG
CCAGGTCCAATCTTACAAGTCTCAAGTCTTCTCTGCAGCTTTACCGGCAATTTAAGAAAGATATAGATGA
ACATCAGTCTCTGACGGAGAGTGTCTTACAGAAGGGGGAGATTCTTCTTCAGTGCCTGTTGGAGAACACC
CCAGTTTTAGAGGATGTCCTTGGGAGGATCGCAAAGCAGTCTGGTGAGCTGGAGAGCCACGCAGATCGCC
TGTATGACTCTATCTTGGCCTCTCTGGACATGCTGGCTGGCTGCACCCTTATCCCTGACAAAAAGCCCAT
GGCGGCAATGGAGCACCCATGTGAAGGGGTTTAA

Translation (757 aa):
MALGEEKAEAEASEDTKAQSYGRGSCRERELDIPGPMSGEQPPRLEAEGGLISPVWGAEGIPAPTCWIGT
DPGGPSRAHQPQASDANREPVAERSEPALSGLPPATMGSGDLLLSGESQVEKTKLSSSEEFPQTLSLPRT
TTICSGHDADTEDDPSLADLPQALDLSQQPHSSGLSCLSQWKSVLSPGSAAQPSSCSISASSTGSSLQGH
QERAEPRGGSLAKVSSSLEPVVPQEPSSVVGLGPRPQWSPQPVFSGGDASGLGRRRLSFQAEYWACVLPD
SLPPSPDRHSPLWNPNKEYEDLLDYTYPLRPGPQLPKHLDSRVPADPVLQDSGVDLDSFSVSPASTLKSP
TNVSPNCPPAEATALPFSGPREPSLKQWPSRVPQKQGGMGLASWSQLASTPRAPGSRDARWERREPALRG
AKDRLTIGKHLDMGSPQLRTRDRGWPSPRPEREKRTSQSARRPTCTESRWKSEEEVESDDEYLALPARLT
QVSSLVSYLGSISTLVTLPTGDIKGQSPLEVSDSDGPASFPSSSSQSQLPPGAALQGSGDPEGQNPCFLR
SFVRAHDSAGEGSLGSSQALGVSSGLLKTRPSLPARLDRWPFSDPDVEGQLPRKGGEQGKESLVQCVKTF
CCQLEELICWLYNVADVTDHGTAARSNLTSLKSSLQLYRQFKKDIDEHQSLTESVLQKGEILLQCLLENT
PVLEDVLGRIAKQSGELESHADRLYDSILASLDMLAGCTLIPDKKPMAAMEHPCEGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH