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Report for CCDS18851.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18851.1 Public Mus musculus 4 Igsf21 23 108 98 CCDS HistoryNCBI Gene:230868Re-query CCDS DB by CCDS ID:18851.1Re-query CCDS DB by GeneID:230868See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18851.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039331.8 ENSMUSP00000046558.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039331.8Link to Ensembl Protein Viewer:ENSMUSP00000046558.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000039331Re-query CCDS DB by Protein ID:ENSMUSP00000046558
Original member Current member NCBI NM_198610.2 NP_941012.1 Accepted alive Link to Nucleotide Sequence:NM_198610.2Link to Protein Sequence:NP_941012.1Re-query CCDS DB by Nucleotide ID:NM_198610Re-query CCDS DB by Protein ID:NP_941012Link to BLAST:NP_941012.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941012.1 468 Q7TNR6 468 100% 0 0

Chromosomal Locations for CCDS 18851.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 140027005 140027078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140027724 140027762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140028049 140028241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140028698 140028783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140034351 140034825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140037423 140037538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140067137 140067255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140107255 140107376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140157461 140157573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140246302 140246371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGCAAGCTGCTCCAAGCCTCCGCCGCGCTTCCTGCCTGCTGCTCGCCGCGATTCTGGACCTGGCACGCG
GCTACCTGACAGTCAACATTGAGCCCCTTCCCCCTGTGGTGGCTGGGGACGCAGTGACCCTGAAGTGTAA
CTTCAAGACAGACGGCCGTATGCGTGAGATCGTGTGGTACCGGGTGACAGATGGCGGCACCATCAAGCAG
AAGATCTTCACGTTTGACGCCATGTTCTCCACGAACTACTCGCACATGGAGAATTACCGCAAGAGGGAGG
ACCTTGTGTATCAGTCCACCGTGAGGCTGCCCGAGGTCCGGATCTCAGACAATGGTCCCTATGAGTGCCA
CGTGGGTATCTACGACCGAGCCACGAGGGAGAAGGTGGTCCTCGCCTCAGGCAACATCTTCCTCAATGTC
ATGGCTCCTCCCACCTCCATCGAAGTCGTGGCTGCTGACTCCCCTGCCCCCTTTAGCCGGTACCAGGCCC
AGAACTTCACACTGGTCTGCATCGTGTCAGGAGGGAAGCCGGCGCCCATGGTTTATTTCAAACGGGACGG
GGAGCCGATAGATGCCGTGCCCCTGACAGAACTGCCAGCAGCCAGCTCTGGCCCAGTCCAGGACAGCAGG
CCCTTCCGAAGCCTTCTGCACCGAGACGTGGATGATACCAAAATGCAAAAGTCACTGTCCCTTCTGGACA
CTGAATACCGGGCTGGACGTCCCTACACGGAGCGCCCCGCGCGCAGCCTGACCCAGGACCCCAGCCTCTT
CGTGCAGCCCACCACGGAAAACATCCCAGAGACAGTGGTGAGCCGAGAGTTCCCCCGTTGGGTACACAGC
GCCGAGCCGGTCTACTTCCTGCGCCACAGCCGCACCCCAGGCAGCGATGGCACGGTGGAGGTGCGGGCCC
TGCTCACCTGGACCCTCAACCCGCAGATCGACAATGAGGCCCTCTTCAGCTGTGAGGTCAAGCACCCAGC
GCTGTCCATGCCCATGCAGGCGGAGGTCACGCTGGTTGCTCCCAAAGGACCCAAAATCATGATGACGCCC
AGCAGAGCCCGGGTTGGGGACACAGTGAGGATCCTAGTCCACGGATTTCAGAATGAGGTCTTCCCAGAAC
CCATGTTCACGTGGACGAGAGTGGGCAGCCGCCTCCTGGATGGCAGTGCCGAGTTTGACGGGAAGGAGCT
TGTGCTGGAGCGGGTTCCTGCCGAGCTCAACGGCTCCATGTACCGCTGCACTGCCCAGAACCCCCTGGGC
TCCACTGATACACACACTCGGCTCATCGTGTTCGAAAACCCAAATATCCCAAGAGGAACAGAGGACTCCC
GTGGTTCTGCTTCCGGCCCCGCTGGCGTCCGGCTCACCCTGGTGCTTGCCCTGACAGTGATCCTGGAGCT
CACGTGA

Translation (468 aa):
MQAAPSLRRASCLLLAAILDLARGYLTVNIEPLPPVVAGDAVTLKCNFKTDGRMREIVWYRVTDGGTIKQ
KIFTFDAMFSTNYSHMENYRKREDLVYQSTVRLPEVRISDNGPYECHVGIYDRATREKVVLASGNIFLNV
MAPPTSIEVVAADSPAPFSRYQAQNFTLVCIVSGGKPAPMVYFKRDGEPIDAVPLTELPAASSGPVQDSR
PFRSLLHRDVDDTKMQKSLSLLDTEYRAGRPYTERPARSLTQDPSLFVQPTTENIPETVVSREFPRWVHS
AEPVYFLRHSRTPGSDGTVEVRALLTWTLNPQIDNEALFSCEVKHPALSMPMQAEVTLVAPKGPKIMMTP
SRARVGDTVRILVHGFQNEVFPEPMFTWTRVGSRLLDGSAEFDGKELVLERVPAELNGSMYRCTAQNPLG
STDTHTRLIVFENPNIPRGTEDSRGSASGPAGVRLTLVLALTVILELT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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