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Report for CCDS18941.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18941.1 Public Mus musculus 4 Masp2 23 108 98 CCDS HistoryNCBI Gene:17175Re-query CCDS DB by CCDS ID:18941.1Re-query CCDS DB by GeneID:17175See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18941.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052060.6 ENSMUSP00000049729.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052060.6Link to Ensembl Protein Viewer:ENSMUSP00000049729.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000052060Re-query CCDS DB by Protein ID:ENSMUSP00000049729
Original member NCBI NM_001003893.2 NP_001003893.1 Updated not alive Link to Nucleotide Sequence:NM_001003893.2Link to Protein Sequence:NP_001003893.1Re-query CCDS DB by Nucleotide ID:NM_001003893Re-query CCDS DB by Protein ID:NP_001003893
Current member NCBI NM_001003893.3 NP_001003893.1 Accepted alive Link to Nucleotide Sequence:NM_001003893.3Link to Protein Sequence:NP_001003893.1Re-query CCDS DB by Nucleotide ID:NM_001003893Re-query CCDS DB by Protein ID:NP_001003893Link to BLAST:NP_001003893.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003893.1 685 Q91WP0-1 685 100% 0 0

Chromosomal Locations for CCDS 18941.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 148602586 148602590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148602668 148602896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148602992 148603169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148603687 148603818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148605580 148605776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148606029 148606176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148607941 148608059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148610117 148610195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148612035 148612166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148612651 148612725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148613758 148614521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2058 nt):
ATGAGGCTACTCATCTTCCTGGGTCTGCTGTGGAGTTTGGTGGCCACACTTCTGGGTTCAAAGTGGCCTG
AACCTGTATTCGGGCGCCTGGTGTCCCCTGGCTTCCCAGAGAAGTATGCTGACCATCAAGATCGATCCTG
GACACTGACTGCACCCCCTGGCTACCGCCTGCGCCTCTACTTCACCCACTTTGACCTGGAACTCTCTTAC
CGCTGCGAGTATGACTTTGTCAAGTTGAGCTCAGGGACCAAGGTGCTGGCCACACTGTGTGGGCAGGAGA
GTACAGACACTGAGCAGGCACCTGGCAATGACACCTTCTACTCACTGGGTCCCAGCCTAAAGGTCACCTT
CCACTCCGACTACTCCAATGAGAAGCCGTTCACAGGGTTTGAGGCCTTCTATGCAGCGGAGGATGTGGAT
GAATGCAGAGTGTCTCTGGGAGACTCAGTCCCTTGTGACCATTATTGCCACAACTACTTGGGCGGCTACT
ATTGCTCCTGCAGAGCGGGCTACGTTCTCCACCAGAACAAGCACACGTGCTCAGCCCTTTGTTCAGGCCA
GGTGTTCACAGGAAGATCTGGGTATCTCAGTAGCCCTGAGTACCCACAGCCATACCCCAAGCTCTCCAGC
TGCACCTACAGCATCCGCCTGGAGGACGGCTTCAGTGTCATCCTGGACTTCGTGGAGTCCTTCGATGTGG
AGACGCACCCTGAAGCCCAGTGCCCCTATGACTCCCTCAAGATTCAAACAGACAAGGGGGAACACGGCCC
ATTTTGTGGGAAGACGCTGCCTCCCAGGATTGAAACTGACAGCCACAAGGTGACCATCACCTTTGCCACT
GACGAGTCGGGGAACCACACAGGCTGGAAGATACACTACACAAGCACAGCACGGCCCTGCCCTGATCCAA
CGGCGCCACCTAATGGCAGCATTTCACCTGTGCAAGCCATATATGTCCTGAAGGACAGGTTTTCTGTCTT
CTGCAAGACAGGCTTCGAGCTTCTGCAAGGTTCTGTCCCCCTGAAATCATTCACTGCTGTCTGTCAGAAA
GATGGATCTTGGGACCGGCCGATGCCAGAGTGCAGCATTATTGATTGTGGCCCTCCTGATGACCTACCCA
ATGGCCATGTGGACTATATCACAGGCCCTGAAGTGACTACCTACAAAGCTGTGATTCAGTACAGCTGTGA
AGAGACTTTCTACACAATGAGCAGCAATGGTAAATATGTGTGTGAGGCTGATGGATTCTGGACGAGCTCC
AAAGGAGAAAAACTCCCCCCGGTTTGTGAGCCTGTTTGTGGGCTGTCCACACACACTATAGGAGGACGCA
TAGTTGGAGGGCAGCCTGCAAAGCCTGGTGACTTTCCTTGGCAAGTCTTGTTGCTGGGTCAAACTACAGC
AGCAGCAGGTGCACTTATACATGACAATTGGGTCCTAACAGCCGCTCATGCTGTATATGAGAAAAGAATG
GCAGCGTCCTCCCTGAACATCCGAATGGGCATCCTCAAAAGGCTCTCACCTCATTACACTCAAGCCTGGC
CCGAGGAAATCTTTATACATGAAGGCTACACTCACGGTGCTGGTTTTGACAATGATATAGCATTGATTAA
ACTCAAGAACAAAGTCACAATCAACGGAAGCATCATGCCTGTTTGCCTACCGCGAAAAGAAGCTGCATCC
TTAATGAGAACAGACTTCACTGGAACTGTGGCTGGCTGGGGGTTAACCCAGAAGGGGCTTCTTGCTAGAA
ACCTAATGTTTGTGGACATACCAATTGCTGACCACCAAAAATGTACCGCCGTGTATGAAAAGCTCTATCC
AGGAGTAAGAGTAAGCGCTAACATGCTCTGTGCTGGCTTAGAGACTGGTGGCAAGGACAGCTGCAGAGGT
GACAGTGGGGGGGCATTAGTGTTTCTAGATAATGAGACACAGCGATGGTTTGTGGGAGGAATAGTTTCCT
GGGGTTCCATTAATTGTGGGGCGGCAGACCAGTATGGGGTCTACACAAAAGTCATCAACTATATTCCCTG
GATTGAGAACATAATAAGTAATTTCTAA

Translation (685 aa):
MRLLIFLGLLWSLVATLLGSKWPEPVFGRLVSPGFPEKYADHQDRSWTLTAPPGYRLRLYFTHFDLELSY
RCEYDFVKLSSGTKVLATLCGQESTDTEQAPGNDTFYSLGPSLKVTFHSDYSNEKPFTGFEAFYAAEDVD
ECRVSLGDSVPCDHYCHNYLGGYYCSCRAGYVLHQNKHTCSALCSGQVFTGRSGYLSSPEYPQPYPKLSS
CTYSIRLEDGFSVILDFVESFDVETHPEAQCPYDSLKIQTDKGEHGPFCGKTLPPRIETDSHKVTITFAT
DESGNHTGWKIHYTSTARPCPDPTAPPNGSISPVQAIYVLKDRFSVFCKTGFELLQGSVPLKSFTAVCQK
DGSWDRPMPECSIIDCGPPDDLPNGHVDYITGPEVTTYKAVIQYSCEETFYTMSSNGKYVCEADGFWTSS
KGEKLPPVCEPVCGLSTHTIGGRIVGGQPAKPGDFPWQVLLLGQTTAAAGALIHDNWVLTAAHAVYEKRM
AASSLNIRMGILKRLSPHYTQAWPEEIFIHEGYTHGAGFDNDIALIKLKNKVTINGSIMPVCLPRKEAAS
LMRTDFTGTVAGWGLTQKGLLARNLMFVDIPIADHQKCTAVYEKLYPGVRVSANMLCAGLETGGKDSCRG
DSGGALVFLDNETQRWFVGGIVSWGSINCGAADQYGVYTKVINYIPWIENIISNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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