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Report for CCDS18978.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
18978.1 |
Public |
Mus musculus |
4 |
Per3 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:18628](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:18978.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:18628](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 4 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 18978.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000103204.10 |
ENSMUSP00000099493.4 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000103204.10](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000099493.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000103204](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000099493](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_011067.3 |
NP_035197.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_011067.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_035197.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_011067](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_035197](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_035197.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_035197.2 |
1113 |
O70361 |
1113 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 18978.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3342 nt): ATGGATCCCTGTGGAGACCCGGCAGTACCTGGTGGCGACTGTCCCCAGACTAGGGGACCGGGGCTCCAGG GGGCGTCTGGCCAGGAGGGTCCTCTGCAGGGCACTTGCGTGGACAGCAGCCACAGTGAACACGAAGACCG AAACAGAATGTCTGAAGAGCTTATAATGGTTGTCCAAGAAATGAAAAAGTATTTCCCAGCCGAGAGGCAC ACTAAGCCCAGTACCCTAGATGCTCTTAACTATGCCCTGCGCTGTGTACACAGTGTGCAAGCAAACAGTG ACTTTTTCCAGAGTCTCGGTCCACGCGGAGCACACCAGGCAGATGTGACTGTATACAGTCTTGAGGACCT CACCGCTCTGGCTTCTGAACATACTTCTAAGAACACAGATACCTTCGCGGCCGTGTTTTCGTTTCTGTCT GGAAGGTTAGTGCACATTTCTGAGCAGGCTGCTTTGATCCTGAATTCTAAGAGGGGTTTCCTCAAGAGCG TGCACTTTGTCGACCTGCTTGCCCCTCAAGACGTGAGGGCGTTCTACGCGCACACTGCTCCAACTCAGCT TCCTTTCTGGAACAACTGGACCCAAAGAGCCTCGCAGTATGAATGTGCACCAGCGAAACCCTTTTTCTGC AGAATCTGTGGAGGTGGAGACAGAGAGAAGAGGCATTACTCCCCATTCCGGATCCTCCCCTATTTGGTTC ATGTACATAGCTCTGCCCAGCCAGAACCAGAGCCTTGCTGTCTAACACTGGTTGAAAAGATTCACTCTGG TTACGAAGCTCCTCGAATCCCTGTAGATAAAAGAATTTTTACCACAACACACACTCCAGGATGTGTGTTT CTTGAAGTAGATGAAAGAGCAGTGCCTTTGCTGGGTTACCTACCTCAGGATCTGATTGGAACATCGATCT TAACATACTTGCACCCAGAAGATCGGCCTCTGATGGTTGCCATACACCAAAAAGTTTTAAAGTATGCCGG CCACCCTCCGTTTGAACACTCGCCCGTCAGATTCTGCACTCAGAACGGAGAGTATGTCATTCTGGATTCC AGCTGGTCCAGCTTTGTCAACCCCTGGAGCCGGAAGGTCTCCTTCATCATTGGTCGACATAAAGTCCGAA CGAGTCCATTAAATGAAGATGTTTTTGCCACCAGAATAAAAAAGGCAGCCAGTAACGACAAAGACATAGC AGAATTACAAGAACAAATTCACAAACTTCTCTTGCAGCCGGTTCATGCTAGTGCTTCCAGTGGCTACGGG AGCCTGGGCAGCAGCGGCTCACAGGAGCAGCACGTCAGCATCACCTCTTCGAGTGAGTCCAGCGGGCACT GTCCGGAGGAAGGCCAGCATGAGCAGATGACCCTGCAGCAGGTCTATGCCAGTGTAAACAAAATTAAGAA TGTGGGCCAACAGCTCTACATCGAGTCCATGGCCAGATCATCAGTGAAGCCAGTGGCAGAGACGTGCGTG GAACCGCAGGGTGGTGATGAGCAGAAGGACTTTTCTTCCTCTCAGACACTGAAAAATAAAAGCACCACGG ATACTGGCTCCGGTGGCAATCTGCAGCAAGAGCAGCCCAGCTCGTCCTATCAGCAGATGAACTGTATCGA CAGTGTCATCAGGTACCTGACAAGCTACAGCCTCCCGGCCTTGAAAAGAAAGTGCATCTCCTGCACAAAC ACATCTTCATCCTCAGAAGAAGCCAAGCCAATCCCGGAGGTGGACAGCAGCCAGAGAGACACGGAACAGC TCCTGGACATACGGAAACAGGAAACAACTGGACCATCCACAGACATCGAAGGAGGTGCTGCTCGGACCCT GTCCACCGCCGCACTGAGCGTGGCGTCTGGCATCAGCCAGTGCAGCTGCAGCAGCACCTCTGGCCACGCT CCGCCCCTACAGTCAGAAAGTGTTGCCGTGGCGTGTAAGCCGTGGGCCCTGAGAACGAAGGCCTCTCACC TGGCTGCAGGAGGATTTAAGCACGTGGGGCTCACAGCAGCTGTCCTCTCTGCACACACACAGAAGGAAGA GCAGAACTACGTTGACAGGTTCCGGGAAAAGATCCTGACCTCGCCCTACGGTTGCTATCTTCAGCAAGAG AGCAGAAACCGTGCTCAGTACTCCTGTGTTCAAGCAGGGTCCACTGCTAAGCACAGCAGATGTGCTGGAA GCGAGAGGCAGAAGCACAAACGAAAGAAGTTGCCAGCACCTGTGGACACCAGCAGCCCCGGTGCCCACCT CTGTCCCCATGTCACAGGACTCCTCCCGGATGAGCAGCACTGGGGCCCATCCGCTAGCCCCTCCCCCCTC GGCGCAGGCTTAGCATTCCCCTCGGCCCTGGTAGTTCCCAGCCAGACCCCTTATCTCCTCCCCTCTTTTC CCCTCCAAGATATGGCCTCTCAGGGAGTGGGGGTCTCGGCAGCCTGGGGAGCTGCAGCCGGATGTCCACC TCTGTCCGCCGGCCCCCAGGCTGTTGCCGCGTTCCCCTCCGCTTACGTGGATACTTTGATGACCATCTTC CTGCACAACGCCCCTCTCTTCCCTCTGTGGCCGCCCTCGTTCTCCCCATACCCATCCCTGGGGGCCGCAG GGTCTTCTGAACTGGCACCCTTAGTACCAGCAATGGCTCCAAACCCGGAACCAACCACTTCAGGCCACAG CCAAAGGAGAGTGGAGGAGAACTGGGAGGCACACAGTGAAGAGCTTCCGTTCATTAGCTCACGGAGCAGT TCACCGTTACAGTTAAATTTACTCCAGGAAGAAATGCCTGCGCCGTCAGAGTCCGCAGACGCAGTGAGAA GAGGCGCTGGGCCAGACGCTAAGCATCACTGTGTTACAGGTCCCAGTGGCAGTAGGAGCCGTCACTGCAC CTCTGGTGAGCTGGCCACGGCAACAGCGCAGCAGGAGTCTGCTGCTGCCTCAGGAAGCAGTGCCAGCAGT ATATACTTCAGTAGCACTGACTATGCTTCTGAAGTCTCTGAAAACAGACAGAGGCCACAGGATAGACAGA GAGACGAAGCCCTTCCCGGGGCGGCTGAAGAGTCCATCTGGAGAATGATAGAGCGGACACCAGAGTGTGT TCTCATGACATACCAGGTGCCCGAGAGGGGTCGAGAGGAGGTGCTGAAGCAGGACCTGGAGAAGCTCCAG AGCATGGAACAGCAGCAGCCCCTGTTCTCTCCCGCGCAGAGGGAGGAGCTGGCCAAGGTGCGCTCCTGGA TCCACAGCCACACAGCCCCTCAGGAGGGACACCTCCAGAGCTGTGTCGCCTGTGAAGACAGAGGTTCAGT GGGTGACACTGCAGAGGTCCTGGAACAGCACCCAGCAGAAGACACCAGTTGA
Translation (1113 aa): MDPCGDPAVPGGDCPQTRGPGLQGASGQEGPLQGTCVDSSHSEHEDRNRMSEELIMVVQEMKKYFPAERH TKPSTLDALNYALRCVHSVQANSDFFQSLGPRGAHQADVTVYSLEDLTALASEHTSKNTDTFAAVFSFLS GRLVHISEQAALILNSKRGFLKSVHFVDLLAPQDVRAFYAHTAPTQLPFWNNWTQRASQYECAPAKPFFC RICGGGDREKRHYSPFRILPYLVHVHSSAQPEPEPCCLTLVEKIHSGYEAPRIPVDKRIFTTTHTPGCVF LEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEYVILDS SWSSFVNPWSRKVSFIIGRHKVRTSPLNEDVFATRIKKAASNDKDIAELQEQIHKLLLQPVHASASSGYG SLGSSGSQEQHVSITSSSESSGHCPEEGQHEQMTLQQVYASVNKIKNVGQQLYIESMARSSVKPVAETCV EPQGGDEQKDFSSSQTLKNKSTTDTGSGGNLQQEQPSSSYQQMNCIDSVIRYLTSYSLPALKRKCISCTN TSSSSEEAKPIPEVDSSQRDTEQLLDIRKQETTGPSTDIEGGAARTLSTAALSVASGISQCSCSSTSGHA PPLQSESVAVACKPWALRTKASHLAAGGFKHVGLTAAVLSAHTQKEEQNYVDRFREKILTSPYGCYLQQE SRNRAQYSCVQAGSTAKHSRCAGSERQKHKRKKLPAPVDTSSPGAHLCPHVTGLLPDEQHWGPSASPSPL GAGLAFPSALVVPSQTPYLLPSFPLQDMASQGVGVSAAWGAAAGCPPLSAGPQAVAAFPSAYVDTLMTIF LHNAPLFPLWPPSFSPYPSLGAAGSSELAPLVPAMAPNPEPTTSGHSQRRVEENWEAHSEELPFISSRSS SPLQLNLLQEEMPAPSESADAVRRGAGPDAKHHCVTGPSGSRSRHCTSGELATATAQQESAAASGSSASS IYFSSTDYASEVSENRQRPQDRQRDEALPGAAEESIWRMIERTPECVLMTYQVPERGREEVLKQDLEKLQ SMEQQQPLFSPAQREELAKVRSWIHSHTAPQEGHLQSCVACEDRGSVGDTAEVLEQHPAEDTS
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