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Report for CCDS19104.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19104.1 Public Mus musculus 5 Armc10 23 108 98 CCDS HistoryNCBI Gene:67211Re-query CCDS DB by CCDS ID:19104.1Re-query CCDS DB by GeneID:67211See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19104.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072896.12 ENSMUSP00000072669.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072896.12Link to Ensembl Protein Viewer:ENSMUSP00000072669.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000072896Re-query CCDS DB by Protein ID:ENSMUSP00000072669
Original member Current member NCBI NM_026034.5 NP_080310.1 Accepted alive Link to Nucleotide Sequence:NM_026034.5Link to Protein Sequence:NP_080310.1Re-query CCDS DB by Nucleotide ID:NM_026034Re-query CCDS DB by Protein ID:NP_080310Link to BLAST:NP_080310.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080310.1 306 Q9D0L7-1 306 100% 0 0

Chromosomal Locations for CCDS 19104.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 21646103 21646235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21648620 21648768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21651745 21651879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21653376 21653552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21660553 21660624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21661364 21661618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGGTGGCGCGCGGGACGTGGGCTGGGTGGCAGCAGGGCTGGTCCTGGGCGCCGGCGCCTGCTACTGTA
TCTACCGGCTGACTCGGGGACCGCGGCGAGGCGGTCGCCGACTGCGCCCTTCGCGATCCGCAGAAGACCT
AACCGATGGCTCCTATGACGATATCTTAAATGCAGAGCAGCTTAAGAAACTTCTGTATCTGCTGGAGTCA
ACCGACGATCCTGTCATTACTGAAAAGGCCTTGGTCACCTTGGGAAATAATGCAGCCTTCTCCACTAACC
AGGCCATTATTCGTGAGTTGGGTGGTATCCCAATTGTTGGAAACAAAATCAACTCCCTGAACCAAAGTAT
TAAAGAGAAAGCTTTAAATGCACTGAATAACCTGAGTGTGAATGTTGAAAATCAAACTAAGATAAAGATA
TACGTCCCTCAAGTCTGTGAGGACGTCTTTGCTGACCCCCTGAACTCTGCGGTGCAGCTGGCCGGACTGA
GGCTGCTGACAAACATGACGGTCACCAACGACTATCAGCACCTGCTCAGCGGCTCCGTCGCTGGCCTGTT
CCACCTGCTGCTGCTGGGAAACGGAAGCACCAAGGTCCAGGTTTTGAAGCTGCTTTTGAATTTGTCTGAG
AATCCAGCCATGACAGAAGGACTACTGAGTGTCCAAGTGGATTCTTCATTCCTTTCCCTTTATGACGGCC
AAGTAGCAAATGAGATTCTTCTTCGGGCTCTTACACTGTTTCAGAATATAAACAACTGCCTCAAAGTGGA
AGGCCGGTTAGCTAATCAGATTCCTTTTGCTAAAGGGTCATTGTTTTTTCTGTTATACGGAGAAGAATGT
GCCCAGAAAATGAGAGCTTTAGCCTGTCATCATGATGTGGATGTGAAAGAGAAAGCTTTAGCAATAAAGC
CGAAATTCTGA

Translation (306 aa):
MGGARDVGWVAAGLVLGAGACYCIYRLTRGPRRGGRRLRPSRSAEDLTDGSYDDILNAEQLKKLLYLLES
TDDPVITEKALVTLGNNAAFSTNQAIIRELGGIPIVGNKINSLNQSIKEKALNALNNLSVNVENQTKIKI
YVPQVCEDVFADPLNSAVQLAGLRLLTNMTVTNDYQHLLSGSVAGLFHLLLLGNGSTKVQVLKLLLNLSE
NPAMTEGLLSVQVDSSFLSLYDGQVANEILLRALTLFQNINNCLKVEGRLANQIPFAKGSLFFLLYGEEC
AQKMRALACHHDVDVKEKALAIKPKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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