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Report for CCDS19209.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19209.2 Reviewed, update pending Mus musculus 5 Nicol1 23 108 98 CCDS HistoryNCBI Gene:381633Re-query CCDS DB by CCDS ID:19209.2Re-query CCDS DB by GeneID:381633See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 19209.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data and by conservation in rat.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 19209.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094869.11 ENSMUSP00000092467.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094869.11Link to Ensembl Protein Viewer:ENSMUSP00000092467.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000094869Re-query CCDS DB by Protein ID:ENSMUSP00000092467
Original member NCBI NM_001033458.4 NP_001028630.2 Updated not alive Link to Nucleotide Sequence:NM_001033458.4Link to Protein Sequence:NP_001028630.2Re-query CCDS DB by Nucleotide ID:NM_001033458Re-query CCDS DB by Protein ID:NP_001028630
Current member NCBI NM_001033458.5 NP_001028630.3 Pending alive Link to Nucleotide Sequence:NM_001033458.5Link to Protein Sequence:NP_001028630.3Re-query CCDS DB by Nucleotide ID:NM_001033458Re-query CCDS DB by Protein ID:NP_001028630Link to BLAST:NP_001028630.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028630.3 90 Q3UR78-1 90 100% 0 0

Chromosomal Locations for CCDS 19209.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 33983446 33983564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33983757 33983896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33984052 33984140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33984898 33984963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (414 nt):
ATGACGACGACGTCAGGGGGCCCCGGGTGGGGTCGGCTTGGGCGCATGCGCGCGCGTGCGGGTCGCGGTC
GGTCTTCCCGAGTCGCCCGCGCTGCTTGTTCGCGGTTCCTTGAACCGCGGGCGGCCTGGGCTCCTTCTGC
CATGGCCCCCGCGCTCAGGTCCTTGCTGTCGCCACGGACTTTACTGCTGCTGCTGCTGAGCCTGGCGCTG
CTGGGCGCCCGCGCCGAGCCCGCCACCGGGAGCGCTGTCCCCGCTCAGAGCCGCCCGTGCGTGGATTGCC
ACGCATTTGAATTCATGCAGCGCGCCCTTCAGGACCTACGGAAAACCGCCTACAGCCTGGACGCACGGAC
GGAGACCCTCCTGCTGCAGGCTGAGCGCCGGGCTCTGTGTGCCTGCTGGCCAGCTGGACGCTGA

Translation (137 aa):
MTTTSGGPGWGRLGRMRARAGRGRSSRVARAACSRFLEPRAAWAPSAMAPALRSLLSPRTLLLLLLSLAL
LGARAEPATGSAVPAQSRPCVDCHAFEFMQRALQDLRKTAYSLDARTETLLLQAERRALCACWPAGR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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