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Report for CCDS19518.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19518.1 Public Mus musculus 5 Fgfrl1 23 108 98 CCDS HistoryNCBI Gene:116701Re-query CCDS DB by CCDS ID:19518.1Re-query CCDS DB by GeneID:116701See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19518.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000013633.11 ENSMUSP00000013633.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000013633.11Link to Ensembl Protein Viewer:ENSMUSP00000013633.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000013633Re-query CCDS DB by Protein ID:ENSMUSP00000013633
Original member NCBI NM_054071.2 NP_473412.1 Updated not alive Link to Nucleotide Sequence:NM_054071.2Link to Protein Sequence:NP_473412.1Re-query CCDS DB by Nucleotide ID:NM_054071Re-query CCDS DB by Protein ID:NP_473412
Current member NCBI NM_054071.3 NP_473412.1 Accepted alive Link to Nucleotide Sequence:NM_054071.3Link to Protein Sequence:NP_473412.1Re-query CCDS DB by Nucleotide ID:NM_054071Re-query CCDS DB by Protein ID:NP_473412Link to BLAST:NP_473412.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473412.1 529 Q91V87-1 529 100% 0 0

Chromosomal Locations for CCDS 19518.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 108695052 108695118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108703286 108703558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108704667 108704747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108704855 108705139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108705219 108705572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108705816 108706345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGACGCGGAGCCCCGCGCTGCTGCTGCTGCTATTGGGGGCCCTCCCGTCGGCTGAGGCGGCGCGAGGAC
CCCCAAGAATGGCAGACAAAGTGGTCCCACGGCAGGTGGCCCGCCTGGGCCGCACTGTGCGGCTACAGTG
CCCAGTGGAGGGGGACCCACCACCGTTGACCATGTGGACCAAAGATGGCCGCACAATCCACAGTGGCTGG
AGCCGCTTCCGTGTGCTGCCCCAGGGTCTGAAGGTGAAGGAGGTGGAGGCCGAGGATGCCGGTGTTTATG
TGTGCAAGGCCACCAATGGCTTTGGCAGCCTCAGCGTCAACTACACTCTCATCATCATGGATGATATTAG
TCCAGGGAAGGAGAGCCCTGGGCCAGGTGGTTCTTCGGGGGGCCAGGAGGACCCAGCCAGCCAGCAGTGG
GCACGGCCTCGCTTCACACAGCCCTCCAAGATGAGGCGCCGAGTGATTGCACGGCCTGTGGGTAGCTCTG
TGCGGCTCAAGTGTGTGGCCAGTGGGCACCCACGGCCAGACATCATGTGGATGAAGGATGACCAGACCTT
GACGCATCTAGAGGCTAGTGAACACAGAAAGAAGAAGTGGACACTGAGCTTGAAGAACCTGAAGCCTGAA
GACAGTGGCAAGTACACGTGCCGTGTATCTAACAAGGCCGGTGCCATCAACGCCACCTACAAAGTGGATG
TAATCCAGCGGACTCGTTCCAAGCCTGTGCTCACAGGGACACACCCTGTGAACACAACGGTGGACTTCGG
TGGGACAACGTCCTTCCAGTGCAAGGTGCGCAGTGACGTGAAGCCTGTGATCCAGTGGCTGAAGCGGGTG
GAGTACGGCTCCGAGGGACGCCACAACTCCACCATTGATGTGGGTGGCCAGAAGTTTGTGGTGTTGCCCA
CGGGTGATGTGTGGTCACGGCCTGATGGCTCCTACCTCAACAAGCTGCTCATCTCTCGGGCCCGCCAGGA
TGATGCTGGCATGTACATCTGCCTAGGTGCAAATACCATGGGCTACAGTTTCCGTAGCGCCTTCCTCACT
GTATTACCAGACCCCAAACCTCCAGGGCCTCCTATGGCTTCTTCATCGTCATCCACAAGCCTGCCATGGC
CTGTGGTGATCGGCATCCCAGCTGGTGCTGTCTTCATCCTAGGCACTGTGCTGCTCTGGCTTTGCCAGAC
CAAGAAGAAGCCATGTGCCCCAGCATCTACACTTCCTGTGCCTGGGCATCGTCCCCCAGGGACATCCCGA
GAACGCAGTGGTGACAAGGACCTGCCCTCATTGGCTGTGGGCATATGTGAGGAGCATGGATCCGCCATGG
CCCCCCAGCACATCCTGGCCTCTGGCTCAACTGCTGGCCCCAAGCTGTACCCCAAGCTATACACAGATGT
GCACACACACACACATACACACACCTGCACTCACACGCTCTCATGTGGAGGGCAAGGTTCATCAACACCA
GCATGTCCACTATCAGTGCTAAATACAGCGAATCTCCAAGCACTGTGTCCTGAGGTAGGCATTTGGGGGC
CAAGGCAACAGGTTGGGAGAATTGAGAACAATGGAGGAAGAGTATCTTAG

Translation (529 aa):
MTRSPALLLLLLGALPSAEAARGPPRMADKVVPRQVARLGRTVRLQCPVEGDPPPLTMWTKDGRTIHSGW
SRFRVLPQGLKVKEVEAEDAGVYVCKATNGFGSLSVNYTLIIMDDISPGKESPGPGGSSGGQEDPASQQW
ARPRFTQPSKMRRRVIARPVGSSVRLKCVASGHPRPDIMWMKDDQTLTHLEASEHRKKKWTLSLKNLKPE
DSGKYTCRVSNKAGAINATYKVDVIQRTRSKPVLTGTHPVNTTVDFGGTTSFQCKVRSDVKPVIQWLKRV
EYGSEGRHNSTIDVGGQKFVVLPTGDVWSRPDGSYLNKLLISRARQDDAGMYICLGANTMGYSFRSAFLT
VLPDPKPPGPPMASSSSSTSLPWPVVIGIPAGAVFILGTVLLWLCQTKKKPCAPASTLPVPGHRPPGTSR
ERSGDKDLPSLAVGICEEHGSAMAPQHILASGSTAGPKLYPKLYTDVHTHTHTHTCTHTLSCGGQGSSTP
ACPLSVLNTANLQALCPEVGIWGPRQQVGRIENNGGRVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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