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Report for CCDS19556.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19556.1 Public Mus musculus 5 Ssh1 23 108 98 CCDS HistoryNCBI Gene:231637Re-query CCDS DB by CCDS ID:19556.1Re-query CCDS DB by GeneID:231637See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19556.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159592.7 ENSMUSP00000124312.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159592.7Link to Ensembl Protein Viewer:ENSMUSP00000124312.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159592Re-query CCDS DB by Protein ID:ENSMUSP00000124312
Original member Current member NCBI NM_198109.5 NP_932777.2 Accepted alive Link to Nucleotide Sequence:NM_198109.5Link to Protein Sequence:NP_932777.2Re-query CCDS DB by Nucleotide ID:NM_198109Re-query CCDS DB by Protein ID:NP_932777Link to BLAST:NP_932777.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932777.2 1042 Q76I79-1 1042 100% 0 0

Chromosomal Locations for CCDS 19556.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 113942239 113943465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113946276 113946828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113950386 113950586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113951879 113952025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113953253 113953299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113955718 113955846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113957384 113957477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113958714 113958908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113960600 113960665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113961350 113961418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113966180 113966301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113966709 113966773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113970371 113970474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113989646 113989686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113993664 113993732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3129 nt):
ATGGCCTTGGTGACCCTTCAGCGCTCTCCCACGCCCAGCGCCGCGTCTTCCTCCGCAAGCAACAGCGAGT
TGGAGGCTGGCAGCGATGAAGAACGGAAATTGAACCTCAGCTTGAGTGAGAGCTTTTTCATGGTGAAAGG
AGCTGCCCTCTTCCTACAGCAGGGAAACAGCCCACAGGGCCAGCGGAGTCTTCAGCACCCTCACAAGCAT
GCAGGTGATCTGCCTCAGCACCTGCAAGTGATGATCAACCTCCTGCGTTGTGAAGACAGAATCAAGCTGG
CCGTGCGCCTAGAGAGTGTCTGGACCGACCGTGTCCGCTACATGGTCGTGGTATACACCAGCGGGCGCCA
GGACACCGAGGAGAATATTCTGCTGGGAGTTGACTTTTCCAGTAAGGAGAGCAAAAGCTGCACGATCGGA
ATGGTTCTTCGACTCTGGAGCGACACCAAGATTCACCTCGATGGGGACGGCGGGTTCAGTGTGAGCACAG
CGGGCAGGATGCACATATTCAAGCCAGTGTCTGTCCAGGCCATGTGGTCTGCCCTGCAAGTGCTTCACAA
GGCCTGCGAAGTGGCCCGGAGGCATAACTACTTCCCAGGAGGAGTGGCGCTCATCTGGGCCACCTACTAT
GAGAGCTGCATCAGCTCGGAGCAGAGCTGCATCAATGAGTGGAATGCCATGCAGGACCTGGAGTCCACGC
GGCCCGACTCCCCCGCGCTGTTTGTGGACAAGCCAACCGAGGGCGAAAGAACTGAGCGCCTCATTAAAGC
CAAACTCCGGAGCATCATGATGAGCCAGGACCTTGAAAATGTGACTTCTAAGGAAATCCGAAATGAGCTG
GAGAAGCAAATGAACTGCAACCTGAAGGAGTTCAAGGAATTCATCGATAACGAGATGCTGCTCATCCTGG
GCCAGATGGACAAGCCCTCCCTCATCTTTGACCATCTTTATCTTGGCTCCGAGTGGAATGCATCCAATCT
GGAGGAGCTGCAGGGCTCAGGAGTTGACTACATTTTAAATGTCACTAGAGAAATAGACAATTTTTTCCCC
GGCTTGTTTGCGTACCATAACATCCGCGTGTACGATGAGGAGACCACAGACCTTCTTGCCCACTGGAATG
AAGCTTATCATTTCATAAACAAAGCGAAAAGGAATCATTCCAAGTGCCTGGTCCATTGCAAGATGGGCGT
CAGCCGATCTGCGTCCACAGTCATTGCCTACGCCATGAAGGAGTTCGGCTGGCCCCTGGAGAAAGCGTAT
AACTACGTGAAGCAGAAACGTAGTATCACTCGGCCCAACGCAGGCTTTATGAGGCAGCTGTCTGAGTACG
AAGGCATCCTGGATGCAAGCAAACAGCGGCATAACAAACTATGGCGCCAGCAGCCCACAGATGACACCAT
CGCAGAGCCCAGTGAGTTCTTGCCAGAGACCTTGGACGGAGCCCTGGACGCTCAGCTGCCCTGTTTGGAT
GATACCACCCACCCTGGGCTCCCGAGAAGTCTGGCCCCAGGAGGACCCGCTCTCCCCTGTTGTTTTCGAA
GACTCTCGGACCCCCTCCTCCTTCCCCACCATGATGAAACGGGTGGCCTGGTCCACTTAGAGGATCTCGA
GAAGGATGCTCTGTTAGAGGAGGAGGAGTCTCAGCCAGTGGAGGTGCACAAGCTGGTTCAGCATCCCCAG
GAAGGTGCCAGGCTGTGTGAAAAGGACGTAAAGAGGAAACTGGAGTTTGGGAACTCCAAACCCCGCAGTG
ACTCCTTGCCTCAGGTGGAGGAGCTGGAGAAGGACGGTAGCCCAAGAACGGGGAGGTGGAGGCGGGCCTC
CACCCAGCTCGATAGAAGCTTGCTCGACCAGGAAAACCTAAATAACAACAACAGCAAGAGGAGCTGTCCC
GATGACTTGGAGCGCGATGCCATGTTTGGAATTCTCAGCAAAGTGAAGCCTCCCTACACATCCTGTGCCG
ACTGCATGTACCCCACAGCTGGTGGGACTCCCGAGGCCTACATGGAGCGACACGAAGACCCCAGCTCCTC
TGCTATCTGCACCCAGCCAACCTTCCTCCCCCATGTCACGTCTTCCCCAATGGCCCACGCGAGCAGCAGG
TCCCGAGCTCCGGAGAGGCCGGCCTCGGGTCCAGCCAACACCTCTCCATTCCTACTACCAGCAGGCTCCA
GGAAGCCAGATGTCAGTGGCTCTGGAGCCGGGGCTGCCCCGGAACCACCAGCAAGCCTTCTAGAGCCTTC
CAGAGAGACCTCAAAAGCCCTTCCAAAATCTCTCCAGTTGAAGAATCCTCACTGTGACAAGAACGCTGCC
AATATGGAGGTGTCGGCGAAGGAAGAACCGTCGCCTAAGAAAGATCCCAAGCCGGCTAAGGACCTGAGGC
TTCTGTTCAGTAACGAGGCGGAGAAGCCCACCACCAACAGCTACCTGATGCAGCATCAGGAGTCCATCAT
CCAACTGCAGAAGGCAGGCCTGGTCCGAAAGCACACCAAAGAGCTGGAGAGGTTGAAGAGCCTGCCTTCA
GACTCACCAGCTGCCTGCAGGGACAGCGCCACCTGCAGGCTGGAGGCCAGCATCCCGGAGGAGGGTAGCC
AGGAGCCCGCACACCCAGCCCTGTGCAGCCAAGCTGGGTCGGAAGAACAGCCTGTAGGGGGAACCTTGCA
GAAGAGCCCCACGTCTACCCTCCCCCGTTTAGATCACACCAGTAACTTCTCGAAGGACTTCCTGAAGACC
GTGTGTTACACCCCCACCTCCTCCTCCATCAGCTCCAACCTGACCCGGAGCTCCAGCAGCGACAGCATCC
ACAGCGTCCGAGGGAAGCCTGGGCTGGTGAAGCAGCGGGCGCAGGAGATCGAGACGCGGCTGCGCCTGGC
AGGCCTCACCGTGTCGTCCCCGCTGAAAAGGTCCCATTCCCTTGCCAAGCTGGGAAGTCTCAACTTCTCC
ACGGAGGACCTGTCCAGCGAGGCTGACACATCCACCATCGCTGACTCGCAGGACGCCAAGTGTGGTCTCT
CCTCTTCCTTCTTGCCCGAACCCCAGTCTGCGCCAAGGGACCCCGCTGCAACCTCTAAATCATCAGGGAA
ATCTGCCCCAGAACACTTGAAAAGCCCGTCGAGGGTAAACAAAAGCTGA

Translation (1042 aa):
MALVTLQRSPTPSAASSSASNSELEAGSDEERKLNLSLSESFFMVKGAALFLQQGNSPQGQRSLQHPHKH
AGDLPQHLQVMINLLRCEDRIKLAVRLESVWTDRVRYMVVVYTSGRQDTEENILLGVDFSSKESKSCTIG
MVLRLWSDTKIHLDGDGGFSVSTAGRMHIFKPVSVQAMWSALQVLHKACEVARRHNYFPGGVALIWATYY
ESCISSEQSCINEWNAMQDLESTRPDSPALFVDKPTEGERTERLIKAKLRSIMMSQDLENVTSKEIRNEL
EKQMNCNLKEFKEFIDNEMLLILGQMDKPSLIFDHLYLGSEWNASNLEELQGSGVDYILNVTREIDNFFP
GLFAYHNIRVYDEETTDLLAHWNEAYHFINKAKRNHSKCLVHCKMGVSRSASTVIAYAMKEFGWPLEKAY
NYVKQKRSITRPNAGFMRQLSEYEGILDASKQRHNKLWRQQPTDDTIAEPSEFLPETLDGALDAQLPCLD
DTTHPGLPRSLAPGGPALPCCFRRLSDPLLLPHHDETGGLVHLEDLEKDALLEEEESQPVEVHKLVQHPQ
EGARLCEKDVKRKLEFGNSKPRSDSLPQVEELEKDGSPRTGRWRRASTQLDRSLLDQENLNNNNSKRSCP
DDLERDAMFGILSKVKPPYTSCADCMYPTAGGTPEAYMERHEDPSSSAICTQPTFLPHVTSSPMAHASSR
SRAPERPASGPANTSPFLLPAGSRKPDVSGSGAGAAPEPPASLLEPSRETSKALPKSLQLKNPHCDKNAA
NMEVSAKEEPSPKKDPKPAKDLRLLFSNEAEKPTTNSYLMQHQESIIQLQKAGLVRKHTKELERLKSLPS
DSPAACRDSATCRLEASIPEEGSQEPAHPALCSQAGSEEQPVGGTLQKSPTSTLPRLDHTSNFSKDFLKT
VCYTPTSSSISSNLTRSSSSDSIHSVRGKPGLVKQRAQEIETRLRLAGLTVSSPLKRSHSLAKLGSLNFS
TEDLSSEADTSTIADSQDAKCGLSSSFLPEPQSAPRDPAATSKSSGKSAPEHLKSPSRVNKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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