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Report for CCDS19592.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19592.1 Public Mus musculus 5 Pla2g1b 23 108 98 CCDS HistoryNCBI Gene:18778Re-query CCDS DB by CCDS ID:19592.1Re-query CCDS DB by GeneID:18778See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19592.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031495.10 ENSMUSP00000031495.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031495.10Link to Ensembl Protein Viewer:ENSMUSP00000031495.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000031495Re-query CCDS DB by Protein ID:ENSMUSP00000031495
Original member Current member NCBI NM_011107.2 NP_035237.1 Accepted alive Link to Nucleotide Sequence:NM_011107.2Link to Protein Sequence:NP_035237.1Re-query CCDS DB by Nucleotide ID:NM_011107Re-query CCDS DB by Protein ID:NP_035237Link to BLAST:NP_035237.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035237.1 146 Q9Z0Y2 146 100% 0 0

Chromosomal Locations for CCDS 19592.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 115466287 115466320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115470782 115470941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115471993 115472120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115474509 115474627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (441 nt):
ATGAAACTCCTTCTGCTGGCTGCTCTGCTCACAGCAGGCGCTGCTGCACACAGCATCAGCCCTCGGGCTG
TGTGGCAGTTCCGCAATATGATCAAGTGCACCATCCCCGGGAGTGATCCCCTGAAGGATTACAACAACTA
TGGCTGCTACTGTGGCTTGGGCGGCTGGGGCACCCCAGTGGACGACTTAGACAGGTGCTGCCAGACTCAT
GACCACTGCTACAGTCAGGCCAAGAAGCTGGAAAGCTGTAAATTCCTCATAGACAACCCCTACACCAACA
CTTACTCCTACTCATGCTCCGGGAGCGAGATCACCTGCAGCGCCAAAAACAACAAATGCGAGGACTTCAT
CTGCAACTGTGACCGTGAGGCCGCCATCTGCTTCTCCAAGGTCCCGTACAACAAGGAATACAAAAACCTT
GACACCGGGAAATTCTGTTAG

Translation (146 aa):
MKLLLLAALLTAGAAAHSISPRAVWQFRNMIKCTIPGSDPLKDYNNYGCYCGLGGWGTPVDDLDRCCQTH
DHCYSQAKKLESCKFLIDNPYTNTYSYSCSGSEITCSAKNNKCEDFICNCDREAAICFSKVPYNKEYKNL
DTGKFC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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