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Report for CCDS19672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19672.1 Public Mus musculus 5 Ogfod2 23 108 98 CCDS HistoryNCBI Gene:66627Re-query CCDS DB by CCDS ID:19672.1Re-query CCDS DB by GeneID:66627See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19672.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024470.12 ENSMUSP00000024470.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024470.12Link to Ensembl Protein Viewer:ENSMUSP00000024470.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000024470Re-query CCDS DB by Protein ID:ENSMUSP00000024470
Original member Current member NCBI NM_025671.4 NP_079947.1 Accepted alive Link to Nucleotide Sequence:NM_025671.4Link to Protein Sequence:NP_079947.1Re-query CCDS DB by Nucleotide ID:NM_025671Re-query CCDS DB by Protein ID:NP_079947Link to BLAST:NP_079947.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079947.1 349 Q9CQ04 349 100% 0 0

Chromosomal Locations for CCDS 19672.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 124112338 124112466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124112789 124112845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124113218 124113331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124113429 124113528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124114065 124114192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124114388 124114645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124114715 124114978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGGCGACTGCCGCCCAGCGGCGCTTCTGCCGCTGCGCCTGCTTCTGCTCCCAGAACCTGTACGTGGCGC
GCTACGGGCTGCACCTGCGCTTCCGGGACGAGCATCAGCTGCGCCGTGACTACGGCCAGCTCCTGCGCAG
CCGTGGTTGTGTCACCTCCAAGGACTTCCAGCAACTCTTGGAGGAGCTTGAGCAGGAGGTCGGGCGCCGC
CGCAGGCTGGGACAGGAATCGGCTGTCAGGAAGGCTCTCATTGCCAGCTCCTACCACCCGGCTAGGCCTG
AGGTCTACAGCTCACTGCAGGATGCTGCTCTGGCCCCCGAGTTTATGGCTGCAGCTGAATATAGTACGTC
CCCAGGCGCAGATCTTGAGGGCCTTCTCCAGCGTCTGGAGACAGTGTCAGAGGAGAAGCGCATCTATCGG
GTGCCAGTGTTCTCGGCCAAGTTCTGCCAGACCCTGCTGGAAGAGCTGGAGCATTTTGAGCAGTCGGACA
TGCCCAAGGGAAGGCCCAACACCATGAACAACCATGGGGTACTGATGTATGAACTAGGCCTGGATGACCC
CCTGGTGACCCCGCTGCGGGAACGCTTCCTGCTGCCACTGATGGCCTTGTTGTACCCAGACTACGGTGGG
GGCTACCTCGACAGTCACCGTGCCTTTGTGGTCAAGTACGCACTGGGCCAGGACCTGGATCTGGGCTGTC
ACTACGATAATGCTGAGCTTACCCTCAATGTGGCTCTGGGCAAGGACTTCACAGGGGGTGCCCTGTATTT
TGGGGGCCTCTTCCAGGCACCCGCAGCCTTGAAGGAGACCCTGGAAGTGGAGCATGTGGTGGGCTCTGGT
ATCCTGCACCGTGGCGGCCAGCTGCACGGGGCTCGGCCCCTGTGTAAGGGAGAGCGCTGGAACCTCGTCG
TGTGGCTGCGGGCATCTGCTGTTCGAAATCGCCTCTGTCCCATGTGCTGCCAGAAGCCAGAGCTGGTGGA
CGATGAGGGTTTCGGTGACGGCTTTACCCGGGAGGAGCCCACCACAGTGGATGTCTGTGTGTTGACTTGA

Translation (349 aa):
MATAAQRRFCRCACFCSQNLYVARYGLHLRFRDEHQLRRDYGQLLRSRGCVTSKDFQQLLEELEQEVGRR
RRLGQESAVRKALIASSYHPARPEVYSSLQDAALAPEFMAAAEYSTSPGADLEGLLQRLETVSEEKRIYR
VPVFSAKFCQTLLEELEHFEQSDMPKGRPNTMNNHGVLMYELGLDDPLVTPLRERFLLPLMALLYPDYGG
GYLDSHRAFVVKYALGQDLDLGCHYDNAELTLNVALGKDFTGGALYFGGLFQAPAALKETLEVEHVVGSG
ILHRGGQLHGARPLCKGERWNLVVWLRASAVRNRLCPMCCQKPELVDDEGFGDGFTREEPTTVDVCVLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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