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Report for CCDS19723.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19723.1 Public Mus musculus 5 Eif4h 23 108 98 CCDS HistoryNCBI Gene:22384Re-query CCDS DB by CCDS ID:19723.1Re-query CCDS DB by GeneID:22384See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19723.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000202622.3 ENSMUSP00000143910.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202622.3Link to Ensembl Protein Viewer:ENSMUSP00000143910.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202622Re-query CCDS DB by Protein ID:ENSMUSP00000143910
Original member Current member NCBI NM_033561.2 NP_291039.1 Accepted alive Link to Nucleotide Sequence:NM_033561.2Link to Protein Sequence:NP_291039.1Re-query CCDS DB by Nucleotide ID:NM_033561Re-query CCDS DB by Protein ID:NP_291039Link to BLAST:NP_291039.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_291039.1 248 Q9WUK2-1 248 100% 0 0

Chromosomal Locations for CCDS 19723.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 134621509 134621648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134621949 134622086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134624441 134624500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134625366 134625462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134625541 134625605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134627588 134627775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134639241 134639299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGGCGGACTTCGATACCTACGACGATCGGGCCTACAGCAGCTTCGGCGGCGGTAGAGGGTCCCGAGGCA
GTGCTGGTGGCCATGGGTCCCGGAGCCAGAAGGAGCTACCCACAGAGCCCCCCTACACAGCTTACGTAGG
AAATCTCCCTTTTAACACAGTTCAGGGTGACATAGATGCTATCTTTAAGGATCTCAGCATACGGAGTGTG
CGGCTAGTCAGAGACAAAGACACAGACAAATTTAAAGGGTTCTGCTATGTAGAATTTGATGAGGTGGATT
CCCTGAAGGAGGCTCTGACTTATGACGGTGCACTCTTGGGTGACCGGTCACTTCGTGTGGACATTGCAGA
AGGCAGAAAACAAGATAAAGGTGGCTTTGGATTCAGGAAAGGTGGACCTGATGACAGAGGAATGGGTGGC
TCTCGAGAATCTAGAGGTGGATGGGATTCCCGGGATGACTTCAACTCTGGCTACAGGGATGACTTCTTAG
GGGGTAGGGGGGGCAGTCGCCCTGGGGACCGGCGAGCAGGCCCTCCAATGGGGAGTCGCTTTCGAGATGG
CCCTCCTCTGCGTGGCTCCAACATGGACTTCAGAGAACCCACAGAAGAGGAACGAGCACAGAGACCTCGG
CTGCAGCTTAAACCTCGGACAGTGGCAACGCCCCTCAATCAAGTAGCCAACCCCAACTCAGCCATCTTTG
GGGGAGCCAGGCCCAGAGAGGAAGTGGTTCAGAAGGAGCAAGAATGA

Translation (248 aa):
MADFDTYDDRAYSSFGGGRGSRGSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSV
RLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGMGG
SRESRGGWDSRDDFNSGYRDDFLGGRGGSRPGDRRAGPPMGSRFRDGPPLRGSNMDFREPTEEERAQRPR
LQLKPRTVATPLNQVANPNSAIFGGARPREEVVQKEQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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