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Report for CCDS19727.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19727.1 Public Mus musculus 5 Mettl27 23 108 98 CCDS HistoryNCBI Gene:79565Re-query CCDS DB by CCDS ID:19727.1Re-query CCDS DB by GeneID:79565See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19727.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047196.13 ENSMUSP00000039080.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047196.13Link to Ensembl Protein Viewer:ENSMUSP00000039080.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047196Re-query CCDS DB by Protein ID:ENSMUSP00000039080
Original member Current member EBI ENSMUST00000111218.7 ENSMUSP00000106849.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111218.7Link to Ensembl Protein Viewer:ENSMUSP00000106849.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111218Re-query CCDS DB by Protein ID:ENSMUSP00000106849
Original member Current member EBI ENSMUST00000111219.7 ENSMUSP00000106850.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111219.7Link to Ensembl Protein Viewer:ENSMUSP00000106850.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111219Re-query CCDS DB by Protein ID:ENSMUSP00000106850
Original member Current member NCBI NM_001359535.1 NP_001346464.1 Accepted alive Link to Nucleotide Sequence:NM_001359535.1Link to Protein Sequence:NP_001346464.1Re-query CCDS DB by Nucleotide ID:NM_001359535Re-query CCDS DB by Protein ID:NP_001346464Link to BLAST:NP_001346464.1
Original member Current member NCBI NM_001359536.1 NP_001346465.1 Accepted alive Link to Nucleotide Sequence:NM_001359536.1Link to Protein Sequence:NP_001346465.1Re-query CCDS DB by Nucleotide ID:NM_001359536Re-query CCDS DB by Protein ID:NP_001346465Link to BLAST:NP_001346465.1
Original member Current member NCBI NM_001359537.1 NP_001346466.1 Accepted alive Link to Nucleotide Sequence:NM_001359537.1Link to Protein Sequence:NP_001346466.1Re-query CCDS DB by Nucleotide ID:NM_001359537Re-query CCDS DB by Protein ID:NP_001346466Link to BLAST:NP_001346466.1
Original member Current member NCBI NM_024479.2 NP_077799.2 Accepted alive Link to Nucleotide Sequence:NM_024479.2Link to Protein Sequence:NP_077799.2Re-query CCDS DB by Nucleotide ID:NM_024479Re-query CCDS DB by Protein ID:NP_077799Link to BLAST:NP_077799.2

Chromosomal Locations for CCDS 19727.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 134932725 134932847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134933473 134933601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134934289 134934424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134935779 134935871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134940457 134940692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGACTCAGGAGGAGGCTGGGCGGCTGCCCCAAGTACTGGCCCGGGTCGGAACCTCCCACGGTATCACCG
ACCTGGCCTGCAAGCTCCGCTTCTATGACGACTGGGCTCCGGAGTATGACCAGGATGTGGCTGCTTTGAA
GTACCGAGCCCCACGCCTTGCTGTGGATTGTCTCAGTCGAGCCTTTCGGGGCTCACCCCATGATGCCCTG
ATCCTCGATGTGGCCTGTGGCACTGGCCTGGTAGCTGTGGAGCTGCAGGCTCGGGGCTTCCTCCAGGTGC
AGGGCGTGGATGGAAGCCCAGAAATGCTGAAGCAGGCGCGGGCACGTGGCCTGTACCACCACCTTAGCCT
CTGTACCCTGGGCCAGGAGCCACTGCCCGACCCTGAAGGGACCTTTGACGCGGTGATCATTGTGGGTGCC
CTCAGTGAGGGACAGGTGCCCTGCAGTGCCATACCTGAGCTCTTAAGAGTCACCAAGCCAGGTGGACTTG
TTTGTCTGACTACCAGGACCAACCCATCCAACCTTCCATACAAGGAGACGCTGGAAGCGACCTTAGACTC
CCTGGAGCGGGCTGGAGTGTGGGAATGCCTGGTGACCCAGCCTGTGGACCACTGGGAGCTAGCAACATCA
GAACAAGAGACAGGGCTAGGCACCTGTGCCAATGATGGCTTCATCTCTGGCATCATCTACCTTTACCGGA
AGCAGGAGACAGTATAG

Translation (238 aa):
MTQEEAGRLPQVLARVGTSHGITDLACKLRFYDDWAPEYDQDVAALKYRAPRLAVDCLSRAFRGSPHDAL
ILDVACGTGLVAVELQARGFLQVQGVDGSPEMLKQARARGLYHHLSLCTLGQEPLPDPEGTFDAVIIVGA
LSEGQVPCSAIPELLRVTKPGGLVCLTTRTNPSNLPYKETLEATLDSLERAGVWECLVTQPVDHWELATS
EQETGLGTCANDGFISGIIYLYRKQETV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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