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Report for CCDS19871.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
19871.1 |
Public |
Mus musculus |
5 |
Gpr12 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:14738](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:19871.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:14738](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 5 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 19871.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000036211.7 |
ENSMUSP00000038245.6 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000036211.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000038245.6](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000036211](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000038245](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000197431.1 |
ENSMUSP00000142889.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000197431.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000142889.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000197431](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000142889](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001010941.2 |
NP_001010941.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001010941.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001010941.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001010941](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001010941](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001010941.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001359055.1 |
NP_001345984.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001359055.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001345984.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001359055](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001345984](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001345984.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001359056.1 |
NP_001345985.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001359056.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001345985.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001359056](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001345985](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001345985.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001359057.1 |
NP_001345986.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001359057.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001345986.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001359057](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001345986](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001345986.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_008151.3 |
NP_032177.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_008151.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_032177.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_008151](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_032177](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_032177.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 19871.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1005 nt): ATGAACGAAGACCCGAAGGTCAATTTAAGCGGGCTGCCTCGGGACTGTATAGATGCCGGTGCTCCAGAGA ACATCTCAGCCGCTGTCCCCTCCCAGGGCTCTGTTGCGGAGTCAGAACCCGAGCTCGTTGTCAACCCCTG GGACATTGTCTTGTGCAGCTCAGGAACCCTCATCTGCTGTGAAAATGCCGTTGTGGTCCTTATCATCTTC CACAGCCCCAGCCTGCGAGCCCCCATGTTCCTACTGATAGGCAGCCTGGCTCTTGCAGACCTGCTGGCTG GCCTGGGACTCATCATCAATTTTGTTTTTGCGTACCTGCTTCAGTCAGAAGCCACCAAGCTGGTCACCAT CGGACTCATTGTCGCCTCTTTCTCTGCCTCTGTCTGCAGTTTGCTGGCTATTACTGTGGACCGCTACCTC TCGCTATATTACGCCCTGACGTACCACTCCGAGAGGACCGTCACCTTTACCTATGTCATGCTAGTGATGC TCTGGGGAACCTCCATCTGCCTGGGGCTGCTGCCCGTCATGGGCTGGAACTGCTTGAGGGACGAGTCCAC CTGCAGCGTGGTCAGACCTCTCACTAAGAACAACGCTGCCATCCTCTCCATCTCCTTCCTCTTCATGTTT GCTCTGATGCTTCAGCTCTACATCCAGATTTGTAAGATTGTGATGAGGCACGCCCATCAGATAGCCCTGC AGCACCACTTCCTGGCTACATCGCACTATGTGACTACCCGGAAAGGGGTCTCGACCCTGGCTCTCATCCT AGGGACCTTTGCTGCCTGCTGGATGCCTTTCACCCTCTATTCCTTGATCGCCGATTACACCTACCCTTCG ATCTATACCTATGCCACCCTCCTGCCCGCCACCTACAATTCCATCATCAACCCTGTCATTTACGCTTTCA GAAACCAAGAGATCCAGAAAGCCCTCTGCCTCATTTGCTGTGGGTGCATCCCTTCCTCGCTGTCTCAGAG AGCTCGGTCTCCCAGCGATGTGTAG
Translation (334 aa): MNEDPKVNLSGLPRDCIDAGAPENISAAVPSQGSVAESEPELVVNPWDIVLCSSGTLICCENAVVVLIIF HSPSLRAPMFLLIGSLALADLLAGLGLIINFVFAYLLQSEATKLVTIGLIVASFSASVCSLLAITVDRYL SLYYALTYHSERTVTFTYVMLVMLWGTSICLGLLPVMGWNCLRDESTCSVVRPLTKNNAAILSISFLFMF ALMLQLYIQICKIVMRHAHQIALQHHFLATSHYVTTRKGVSTLALILGTFAACWMPFTLYSLIADYTYPS IYTYATLLPATYNSIINPVIYAFRNQEIQKALCLICCGCIPSSLSQRARSPSDV
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