NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19968.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19968.1 Public Mus musculus 6 Nrf1 23 108 98 CCDS HistoryNCBI Gene:18181Re-query CCDS DB by CCDS ID:19968.1Re-query CCDS DB by GeneID:18181See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19968.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115209.7 ENSMUSP00000110864.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115209.7Link to Ensembl Protein Viewer:ENSMUSP00000110864.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115209Re-query CCDS DB by Protein ID:ENSMUSP00000110864
Original member Current member EBI ENSMUST00000115211.7 ENSMUSP00000110866.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115211.7Link to Ensembl Protein Viewer:ENSMUSP00000110866.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115211Re-query CCDS DB by Protein ID:ENSMUSP00000110866
Original member Current member EBI ENSMUST00000115212.7 ENSMUSP00000110867.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115212.7Link to Ensembl Protein Viewer:ENSMUSP00000110867.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115212Re-query CCDS DB by Protein ID:ENSMUSP00000110867
Original member Current member EBI ENSMUST00000167972.8 ENSMUSP00000130108.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167972.8Link to Ensembl Protein Viewer:ENSMUSP00000130108.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000167972Re-query CCDS DB by Protein ID:ENSMUSP00000130108
Original member NCBI NM_001164226.1 NP_001157698.1 Updated not alive Link to Nucleotide Sequence:NM_001164226.1Link to Protein Sequence:NP_001157698.1Re-query CCDS DB by Nucleotide ID:NM_001164226Re-query CCDS DB by Protein ID:NP_001157698
Current member NCBI NM_001164226.2 NP_001157698.1 Accepted alive Link to Nucleotide Sequence:NM_001164226.2Link to Protein Sequence:NP_001157698.1Re-query CCDS DB by Nucleotide ID:NM_001164226Re-query CCDS DB by Protein ID:NP_001157698Link to BLAST:NP_001157698.1
Original member NCBI NM_001361694.1 NP_001348623.1 Updated not alive Link to Nucleotide Sequence:NM_001361694.1Link to Protein Sequence:NP_001348623.1Re-query CCDS DB by Nucleotide ID:NM_001361694Re-query CCDS DB by Protein ID:NP_001348623
Current member NCBI NM_001361694.2 NP_001348623.1 Accepted alive Link to Nucleotide Sequence:NM_001361694.2Link to Protein Sequence:NP_001348623.1Re-query CCDS DB by Nucleotide ID:NM_001361694Re-query CCDS DB by Protein ID:NP_001348623Link to BLAST:NP_001348623.1
Original member NCBI NM_001361695.1 NP_001348624.1 Updated not alive Link to Nucleotide Sequence:NM_001361695.1Link to Protein Sequence:NP_001348624.1Re-query CCDS DB by Nucleotide ID:NM_001361695Re-query CCDS DB by Protein ID:NP_001348624
Current member NCBI NM_001361695.2 NP_001348624.1 Accepted alive Link to Nucleotide Sequence:NM_001361695.2Link to Protein Sequence:NP_001348624.1Re-query CCDS DB by Nucleotide ID:NM_001361695Re-query CCDS DB by Protein ID:NP_001348624Link to BLAST:NP_001348624.1
Original member NCBI NM_010938.4 NP_035068.3 Updated not alive Link to Nucleotide Sequence:NM_010938.4Link to Protein Sequence:NP_035068.3Re-query CCDS DB by Nucleotide ID:NM_010938Re-query CCDS DB by Protein ID:NP_035068
Current member NCBI NM_010938.5 NP_035068.3 Accepted alive Link to Nucleotide Sequence:NM_010938.5Link to Protein Sequence:NP_035068.3Re-query CCDS DB by Nucleotide ID:NM_010938Re-query CCDS DB by Protein ID:NP_035068Link to BLAST:NP_035068.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157698.1 503 Q9WU00-1 503 100% 0 0
NP_001348623.1 503 Q9WU00-1 503 100% 0 0
NP_001348624.1 503 Q9WU00-1 503 100% 0 0
NP_035068.3 503 Q9WU00-1 503 100% 0 0

Chromosomal Locations for CCDS 19968.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30089924 30090146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30095340 30095454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30098449 30098575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30102169 30102309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30115013 30115171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30116096 30116293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30117056 30117157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30118949 30119106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30126235 30126359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30151514 30151677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGGAGGAGCACGGAGTGACCCAAACTGAACACATGGCTACCATAGAAGCCCATGCAGTGGCCCAGCAAG
TCCAGCAGGTCCATGTAGCCACGTACACTGAGCACAGTATGCTAAGTGCTGATGAAGACTCCCCTTCCTC
CCCCGAGGACACTTCTTATGATGACTCGGACATCCTCAACTCCACGGCAGCTGATGAGGTAACTGCCCAT
CTGGCTGCTGCAGGTCCTGTGGGAATGGCCGCTGCTGCTGCTGTGGCAACAGGGAAGAAACGGAAACGGC
CTCATGTGTTTGAGTCTAATCCATCTATCCGAAAGAGACAGCAGACACGTTTGCTTCGGAAACTCAGAGC
CACGTTGGATGAGTACACGACGCGAGTGGGACAGCAAGCGATTGTACTCTGCATCTCACCCTCCAAACCC
AACCCTGTCTTCAAGGTGTTTGGCGCAGCACCTTTGGAGAATGTGGTGCGAAAGTACAAGAGCATGATCC
TGGAAGACCTCGAGTCTGCTCTGGCAGAACACGCCCCTGCGCCACAGGAGGTTAATTCAGAGCTGCCGCC
TCTCACCATCGATGGGATTCCAGTCTCTGTGGACAAAATGACCCAGGCTCAGCTTCGGGCATTTATCCCA
GAGATGCTCAAGTATTCCACAGGTCGGGGGAAACCAGGCTGGGGGAAAGAAAGCTGCAAGCCTATCTGGT
GGCCAGAAGATATCCCATGGGCCAATGTCCGCAGTGATGTCCGCACAGAAGAGCAAAAACAAAGGGTTTC
ATGGACCCAGGCATTACGGACCATAGTTAAAAATTGCTATAAGCAACATGGGCGGGAGGATCTTTTATAT
GCTTTTGAAGATCAGCAAACACAAACTCAGGCCACCACCACACACAGTATAGCTCATCTCGTACCATCAC
AGACCGTAGTACAGACCTTCAGCAACCCTGATGGCACCGTGTCGCTCATCCAGGTTGGTACAGGGGCAAC
AGTAGCCACATTGGCTGATGCTTCAGAACTGCCAACCACAGTCACTGTTGCCCAAGTGAATTACTCTGCT
GTGGCTGATGGAGAGGTGGAACAAAACTGGGCCACGTTACAGGGCGGTGAAATGACCATCCAGACGACGC
AAGCATCAGAGGCCACCCAGGCGGTAGCATCACTGGCAGAAGCCGCAGTGGCAGCTTCTCAGGAGATGCA
GCAGGGAGCCACTGTCACCATGGCCCTCAACAGTGAAGCTGCCGCCCATGCTGTCGCCACTCTGGCGGAA
GCCACCTTACAAGGTGGGGGACAGATAGTCCTGTCTGGGGAAACCGCAGCAGCCGTCGGAGCACTTACTG
GAGTCCAAGATGCTAATGGCCTGGTCCAGATCCCTGTGAGCATGTACCAGACTGTGGTAACCAGCCTCGC
CCAGGGCAACGGGCCGGTGCAGGTGGCCATGGCCCCAGTGACCACCAGGATATCGGACAGCGCAGTCACC
ATGGATGGCCAGGCTGTGGAGGTGGTGACCTTGGAACAGTAG

Translation (503 aa):
MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILNSTAADEVTAH
LAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCISPSKP
NPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQEVNSELPPLTIDGIPVSVDKMTQAQLRAFIP
EMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLY
AFEDQQTQTQATTTHSIAHLVPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSA
VADGEVEQNWATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAE
ATLQGGGQIVLSGETAAAVGALTGVQDANGLVQIPVSMYQTVVTSLAQGNGPVQVAMAPVTTRISDSAVT
MDGQAVEVVTLEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH