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Report for CCDS19972.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19972.1 Public Mus musculus 6 Tmem209 23 108 98 CCDS HistoryNCBI Gene:72649Re-query CCDS DB by CCDS ID:19972.1Re-query CCDS DB by GeneID:72649See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19972.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115160.9 ENSMUSP00000110813.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115160.9Link to Ensembl Protein Viewer:ENSMUSP00000110813.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115160Re-query CCDS DB by Protein ID:ENSMUSP00000110813
Original member Current member EBI ENSMUST00000138823.7 ENSMUSP00000138292.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000138823.7Link to Ensembl Protein Viewer:ENSMUSP00000138292.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000138823Re-query CCDS DB by Protein ID:ENSMUSP00000138292
Original member Current member NCBI NM_178625.4 NP_848740.3 Accepted alive Link to Nucleotide Sequence:NM_178625.4Link to Protein Sequence:NP_848740.3Re-query CCDS DB by Nucleotide ID:NM_178625Re-query CCDS DB by Protein ID:NP_848740Link to BLAST:NP_848740.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848740.3 561 Q8BRG8-1 561 100% 0 0

Chromosomal Locations for CCDS 19972.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30482931 30482985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30487375 30487448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30489293 30489390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30489476 30489590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30491087 30491184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30492597 30492722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30494738 30494834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30497167 30497238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30497818 30497993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30501901 30502102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30505733 30505974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30506786 30506917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30508454 30508512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30508666 30508802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30509685 30509687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1686 nt):
ATGATGCAAGGAGACGTAAGCCCCAATCCTTCCCTTATTGACAGAACCATCAAGATGAGAAAAGAAACAG
AAACTAGGAAAGTGGTTTTAGCTTGGGGACTCCTAAATGTATCCATGGCTGGAATGATATATACTGAAAT
GACTGGAAAGTTAATCAGTACATATTATAATGTGACATACTGGCCCCTCTGGTATATCGAACTCGCACTT
GCATCGCTCTTCAGTCTTAATGCCTTGTTTGATTTTTGGAGATACTTCAAATATACCGTAGCACCAACAA
GTCTGGTAGTTAGCCCCGGACAGCAAGCACTGTTAGGGTTGAAACAGGCTGTTGTGCAGACTACACCTCC
CCGTGATTTGGCAGCAACCCAAATCTCTCCATCTCCACCTTCCCCTTCGATTCAAGGTCAAAGTGTGTTA
AGTTATAGCCCATCTCGTTCACCCAGTACCAGTCCCAAGTTTGCCACCAGCTGTATGACTGGGTATAGCC
CTCAACTGCAAGGCCTGTCGTCAGGAGGCCTTGGCTCTTACAGCCCTGGTGTGACTTACTCGCCTGTCAG
TGGCTACAATAAGTTGGCCAGCTTTAGTCTGTCTCCTTCTTCTCCATACCCTACCACTGTGGGCCCAGTG
GAGAGCAGTGGATTGAGAGCTCGCTACCGTTCTCCACCCACGGTCTACAACTCACCCACTGACAAAGAGG
ACTACATGACAGACCTGAGAACTTTGGACACGTTCCTTAGAAGTGAGGAAGAGAAACAGCATAGAGTGAA
GCTGGGGAGCCCAGATTCCACCTCTCCTTCTACCAGCCCTACCTTCTGGAATTACAGTCGTTCTGTGGGT
GATTATGCACAAACCTTAAAGAAGTTTCAGTATCAGCTTGCCTGTAGATCACAGGCCCCATGTGCTAACA
AAGATGAAGCCGATCTCATTTCTAAGCAAGCTGCAGAAGAGGTCTGGGCAAGAGTGACTATGAATAGACA
GCTTCTCGATCACATGGATTCATGGACAGCCAAGTTTAGAAATTGGATCAGTGAGACAATATTGGTGCCG
CTTGTGCAAGAGATTGAGTCTGTCAGCACCCAGATGAGAAGGATGGGCTGTCCAGAGCTACAAATAGGAG
AGGCGAGTGTTACCAGCTTGAAGCAAGCTGCCCTGGTCAGAGCTCCTCTCATTCCAACTCTGAATGCAAT
TGTGCAGTATTTAGACCTCACACCAAATCAGGAGTACTTGTTTGAAAGAATCAAAGAACTTTCTCAGGGG
GGCTGTATGAGTTCATTCAGATGGAACAGAGGTGGAGACTTCAAAGGACGCAAATGGGATACAGACCTGC
CCACTGATTCTGCTATCATCATGCATGTGTTTTGCACCTACCTTGATTCCAGATTACCTCCACACCCTAA
GTACCCTGATGGAAAAACATTCACTTCTCAGCACTTCGTTCAGACGCCAAATAAACCAGATGTTACGAAT
GAAAATGTGTTTTGTATTTATCAGAGTGCTGTCAACCCTCCACATTATGAGCTAATCTATCAGCGGCATG
TCTACAATCTTCCAAAGGGCAGGAATAATATGTTTCATACGTTGCTGATGTTCCTTTATATCATAAAGAC
CAAAGAGTCAGGAATGCTTGGGAGAGTTAACCTTGGGCTCTCTGGCGTGAACATTTTGTGGATCTTTGGA
GAGTAG

Translation (561 aa):
MMQGDVSPNPSLIDRTIKMRKETETRKVVLAWGLLNVSMAGMIYTEMTGKLISTYYNVTYWPLWYIELAL
ASLFSLNALFDFWRYFKYTVAPTSLVVSPGQQALLGLKQAVVQTTPPRDLAATQISPSPPSPSIQGQSVL
SYSPSRSPSTSPKFATSCMTGYSPQLQGLSSGGLGSYSPGVTYSPVSGYNKLASFSLSPSSPYPTTVGPV
ESSGLRARYRSPPTVYNSPTDKEDYMTDLRTLDTFLRSEEEKQHRVKLGSPDSTSPSTSPTFWNYSRSVG
DYAQTLKKFQYQLACRSQAPCANKDEADLISKQAAEEVWARVTMNRQLLDHMDSWTAKFRNWISETILVP
LVQEIESVSTQMRRMGCPELQIGEASVTSLKQAALVRAPLIPTLNAIVQYLDLTPNQEYLFERIKELSQG
GCMSSFRWNRGGDFKGRKWDTDLPTDSAIIMHVFCTYLDSRLPPHPKYPDGKTFTSQHFVQTPNKPDVTN
ENVFCIYQSAVNPPHYELIYQRHVYNLPKGRNNMFHTLLMFLYIIKTKESGMLGRVNLGLSGVNILWIFG
E


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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