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Report for CCDS20171.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20171.1 Public Mus musculus 6 Nt5c3 23 108 98 CCDS HistoryNCBI Gene:107569Re-query CCDS DB by CCDS ID:20171.1Re-query CCDS DB by GeneID:107569See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20171.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031793.7 ENSMUSP00000031793.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031793.7Link to Ensembl Protein Viewer:ENSMUSP00000031793.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000031793Re-query CCDS DB by Protein ID:ENSMUSP00000031793
Original member Current member NCBI NM_026004.3 NP_080280.3 Accepted alive Link to Nucleotide Sequence:NM_026004.3Link to Protein Sequence:NP_080280.3Re-query CCDS DB by Nucleotide ID:NM_026004Re-query CCDS DB by Protein ID:NP_080280Link to BLAST:NP_080280.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080280.3 331 Q9D020-3 331 100% 0 0

Chromosomal Locations for CCDS 20171.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 56882957 56883058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56883675 56883875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56884709 56884871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56886664 56886753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56888323 56888408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56889463 56889509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56891492 56891561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56892790 56892888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56923672 56923809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGGACCGCGCGGCCGTGGCGCGAGTGGGCGCGGTGGCGAGCGCCAGTGTGTGCGCGGTGGTAGCAGGCG
TGGTGCTGGCCCAGTACATATTCACCTTGAAGAGAAAAACGGGCCGCAAGACCAAGATCATCGAAATGAT
GCCAGAATTTCAGAAAAGCTCAGTTCGTATCAAGAACCCTACAAGAGTAGAAGAAATTATCTGTGGTCTC
ATTAAAGGAGGCGCTGCCAAACTTCAGATAATAACAGACTTTGACATGACTCTAAGTAGGTTTTCCTACA
ATGGGAAAAGATGCCCAACGTGTCATAATATCATTGACAACTGTAAGCTTGTTACAGATGAATGTCGAAG
AAAGTTACTGCAGCTAAAGGAGCAGTATTATGCTATTGAAGTTGATCCTGTTCTCACCGTGGAAGAGAAG
TTCCCTTACATGGTAGAGTGGTATACCAAATCTCACGGTTTGCTTATTGAACAAGGCATACCAAAAGCCA
AACTTAAAGAGATTGTGGCTGACTCTGACGTTATGCTCAAGGAAGGATATGAGAATTTCTTCGGTAAACT
TCAACAGCACGGTATCCCTGTGTTCATATTTTCTGCTGGTATTGGTGATGTACTTGAAGAAGTTATCCGG
CAGGCTGGAGTTTATCACTCAAACGTCAAAGTAGTGTCAAACTTCATGGATTTTGATGAAAATGGAGTGC
TGAAAGGATTCAAAGGAGAGTTAATCCACGTGTTCAACAAACACGATGGTGCCCTGAAGAATACAGACTA
CTTCAGCCAGCTGAAAGACAACAGCAACATCATTCTGCTCGGGGACTCCCAAGGAGACCTAAGAATGGCC
GATGGCGTAGCCAATGTTGAACACATTCTGAAAATTGGTTATCTGAATGACAGAGTAGACGAGCTTTTAG
AAAAATACATGGACTCTTATGATATTGTTTTAGTAAAAGAAGAATCATTGGAGGTTGTCAACTCAATTTT
ACAGAAGACATTATAA

Translation (331 aa):
MDRAAVARVGAVASASVCAVVAGVVLAQYIFTLKRKTGRKTKIIEMMPEFQKSSVRIKNPTRVEEIICGL
IKGGAAKLQIITDFDMTLSRFSYNGKRCPTCHNIIDNCKLVTDECRRKLLQLKEQYYAIEVDPVLTVEEK
FPYMVEWYTKSHGLLIEQGIPKAKLKEIVADSDVMLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEEVIR
QAGVYHSNVKVVSNFMDFDENGVLKGFKGELIHVFNKHDGALKNTDYFSQLKDNSNIILLGDSQGDLRMA
DGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVKEESLEVVNSILQKTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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