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Report for CCDS20175.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20175.1 Public Mus musculus 6 Vmn1r11 23 108 98 CCDS HistoryNCBI Gene:113860Re-query CCDS DB by CCDS ID:20175.1Re-query CCDS DB by GeneID:113860See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20175.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071304.2 ENSMUSP00000071272.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071304.2Link to Ensembl Protein Viewer:ENSMUSP00000071272.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000071304Re-query CCDS DB by Protein ID:ENSMUSP00000071272
Original member Current member EBI ENSMUST00000226968.1 ENSMUSP00000154588.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226968.1Link to Ensembl Protein Viewer:ENSMUSP00000154588.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226968Re-query CCDS DB by Protein ID:ENSMUSP00000154588
Original member Current member NCBI NM_053233.2 NP_444463.2 Accepted alive Link to Nucleotide Sequence:NM_053233.2Link to Protein Sequence:NP_444463.2Re-query CCDS DB by Nucleotide ID:NM_053233Re-query CCDS DB by Protein ID:NP_444463Link to BLAST:NP_444463.2

Chromosomal Locations for CCDS 20175.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 57137353 57138252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGTTCTCATTGGAGAATGCTCTTTATATCCAAGCTGGGTTAGGAGTCCTAGCTAATATGTGTCTTCTTG
TTTTCTATATTTTCATAATCCTAGGGCACAGACCTAAGCCCATGGACCTAATCTCCTGTCAACAGACTTT
CATTCACATAATGCTGTTCTTCACTGCAGGAGATATTTTGCATACAGATATATTTGAGTCAATGAATATT
GAGAATGACTTCAAATGCAAAACAACTTTTTACATATGCAGGGTAATGAGAGGCCTCTCTATCTGCACCA
CCTGCCTCCTGAGTGTGTTCCAGGCTGTCACCATCAGTCCCAATACCTCGCTGTTGGCAAAATTTAAACA
TAAACTAAAAAAATACACTATCAATGCTTTCTTCTATATTTGGTCTTTTAATTTGTCCTTCAGTAGTAAC
CTGATCTTCTATGTTGGTGCTTATACCAATGTGAGTGAGACTAACCAGATGAAAGTCACTAAATACTGTT
CTCTCTTCCCAATGAACTATATTATCAGGGGATTGATTTTAACAGTAACAACCTCTAGAGATGTGTTTCT
TGTAGGAGTCATGCTGATTACAAGTACATACATGGTGATAATCTTGTTCAGGCATCAGAGGCAGTGCAAG
CATCTTCATAGCATCAGACACCTGAGAGCATCCCCTGAGAAAAAGGCCACCCAGACCATCTTGCTGCTGG
TGGTTTTCTTTGTGGTCATGTACTGGGTGGACTTCATCATCTCATCCACCTCAGTCCTGTTATGGATGTA
TGACCCAGTCATCCTGACTGTTCAGAAGTTTGTGATGAATGCCTATCCTACAATTACTCCATTGGTACAA
ATCAGTTCTGATAACAGAATAATTAACTTGCTCAAAAACCTGCAGTCAAAATGTCACTAG

Translation (299 aa):
MFSLENALYIQAGLGVLANMCLLVFYIFIILGHRPKPMDLISCQQTFIHIMLFFTAGDILHTDIFESMNI
ENDFKCKTTFYICRVMRGLSICTTCLLSVFQAVTISPNTSLLAKFKHKLKKYTINAFFYIWSFNLSFSSN
LIFYVGAYTNVSETNQMKVTKYCSLFPMNYIIRGLILTVTTSRDVFLVGVMLITSTYMVIILFRHQRQCK
HLHSIRHLRASPEKKATQTILLLVVFFVVMYWVDFIISSTSVLLWMYDPVILTVQKFVMNAYPTITPLVQ
ISSDNRIINLLKNLQSKCH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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